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A 7-methylguanosine cap commits U3 and U8 small nuclear RNAs to the nucleolar localization pathway

Marty R. Jacobson and Thoru Pederson.

in Nucleic Acids Research

February 1998; p ublished online February 1998 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2699 words.

U3 and U8 small nucleolar RNAs (snRNAs) participate in pre-rRNA processing. Like the U1, U2, U4 and U5 major spliceosomal snRNAs, U3 and U8 RNAs are transcribed by RNA polymerase II and...

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A 96-well DNase I footprinting screen for drug–DNA interactions

Tom Ellis, David A. Evans, Christopher R. H. Martin and John A. Hartley.

in Nucleic Acids Research

June 2007; p ublished online June 2007 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 5019 words.

The established protocol for DNase I footprinting has been modified to allow multiple parallel reactions to be rapidly performed in 96-well microtitre plates. By scrutinizing every aspect...

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2A peptides provide distinct solutions to driving stop-carry on translational recoding

Pamila Sharma, Fu Yan, Victoria A. Doronina, Helena Escuin-Ordinas, Martin D. Ryan and Jeremy D. Brown.

in Nucleic Acids Research

April 2012; p ublished online December 2011 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 5879 words.

Expression of viral proteins frequently includes non-canonical decoding events (‘recoding’) during translation. ‘2A’ oligopeptides drive one such event, termed ‘stop-carry on’ recoding....

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A′-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC)

Yoshiyuki Tanaka, Satoshi Fujii, Hidekazu Hiroaki, Takeshi Sakata, Toshiki Tanaka, Seiichi Uesugi, Ken-ichi Tomita and Yoshimasa Kyogoku.

in Nucleic Acids Research

February 1999; p ublished online February 1999 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3932 words.

Here we demonstrate the presence of the A′-RNA conformation using the single crystal structure of a tridecamer: r(UGAGCUUCGGCUC). The average A′-RNA conformation deduced from X-ray fiber...

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The A2453-C2499 wobble base pair in <i>Escherichia coli</i> 23S ribosomal RNA is responsible for pH sensitivity of the peptidyltransferase active site conformation

Mark A. Bayfield, Jill Thompson and Albert E. Dahlberg.

in Nucleic Acids Research

October 2004; p ublished online October 2004 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 4346 words.

Peptide bond formation, catalyzed by the ribosomal peptidyltransferase, has long been known to be sensitive to monovalent cation concentrations and pH. More recently, we and others have...

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AAgMarker 1.0: a resource of serological autoantigen biomarkers for clinical diagnosis and prognosis of various human diseases

Jianbo Pan, Sheng Liu, Heng Zhu and Jiang Qian.

in Nucleic Acids Research

January 2018; p ublished online August 2017 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3753 words.

Abstract

Autoantibodies are produced to target an individual's own antigens (e.g. proteins). They can trigger autoimmune responses and inflammation, and thus,...

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AAindex: Amino Acid Index Database

Shuichi Kawashima, Hiroyuki Ogata and Minoru Kanehisa.

in Nucleic Acids Research

January 1999; p ublished online January 1999 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 990 words.

AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. It consists of two sections: AAindex1 for...

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AAindex: Amino Acid index database

Shuichi Kawashima and Minoru Kanehisa.

in Nucleic Acids Research

January 2000; p ublished online January 2000 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 521 words.

AAindex is a database of amino acid indices and amino acid mutation matrices. An amino acid index is a set of 20 numerical values representing various physico­-chemical and biochemical...

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AAindex: amino acid index database, progress report 2008

Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama and Minoru Kanehisa.

in Nucleic Acids Research

January 2008; p ublished online November 2007 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 1431 words.

AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. We have added a collection of protein...

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AANT: the Amino Acid–Nucleotide Interaction Database

Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong and Andrew D. Ellington.

in Nucleic Acids Research

January 2004; p ublished online January 2004 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 5803 words.

We have created an Amino Acid–Nucleotide Interaction Database (AANT; http://aant.icmb.utexas. edu/) that categorizes all amino acid–nucleotide interactions from experimentally determined...

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