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<i>Aar</i>I, a restriction endonuclease from <i>Arthrobacter aurescens</i> SS2‐322, which recognizes the novel non‐palindromic sequence 5′‐CACCTGC(N)<sub>4/8</sub>‐3′

R. Grigaitė, Z. Manelienė and A. Janulaitis.

in Nucleic Acids Research

November 2002; p ublished online November 2002 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 1980 words.

A new type II restriction endonuclease AarI has been isolated from Arthrobacter aurescens SS2‐322. AarI recognizes the non‐palindromic heptanucleotide sequence 5′‐CACCTGC(N)4/8‐3′ and makes...

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<i>Ab initio</i> DNA synthesis accelerated by endonuclease

Xingguo Liang, Benjamin Chun-Yeung Li, Kari Jensen and Maxim D. Frank-Kamenetskii.

in Nucleic Acids Symposium Series

November 2006; p ublished online November 2006 .

Journal Article. Subjects: Chemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 0 words.

In the presence of an endonuclease that digests double-stranded DNA, DNA polymerase efficiently synthesizes and amplifies DNA from dNTPs in the absence of any added template and primer...

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<i>Ab initio</i> gene identification in metagenomic sequences

Wenhan Zhu, Alexandre Lomsadze and Mark Borodovsky.

in Nucleic Acids Research

July 2010; p ublished online April 2010 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 7865 words.

We describe an algorithm for gene identification in DNA sequences derived from shotgun sequencing of microbial communities. Accurate ab initio gene prediction in a short nucleotide sequence...

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<i>Ab initio</i> identification of transcription start sites in the Rhesus macaque genome by histone modification and RNA-Seq

Yi Liu, Dali Han, Yixing Han, Zheng Yan, Bin Xie, Jing Li, Nan Qiao, Haiyang Hu, Philipp Khaitovich, Yuan Gao and Jing-Dong J. Han.

in Nucleic Acids Research

March 2011; p ublished online October 2010 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 5901 words.

Rhesus macaque is a widely used primate model organism. Its genome annotations are however still largely comparative computational predictions derived mainly from human genes, which...

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Ab initio molecular orbital evaluation of the hydrogen bond energy of base pairs formed between substituted 1-methylcytosine derivatives and 9-methylguanine

Shun-ichi Kawahara, Akio Kobori, Kazunari Taira, Mitsuo Sekine and Tadafumi Uchimaru.

in Nucleic Acids Symposium Series

November 2001; p ublished online November 2001 .

Journal Article. Subjects: Chemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 0 words.

The substitution effect on hydrogen bond energy of the Watson-Crick type base pair between 9-methylguanine (G) and chemically modified 1-methylcytosine (Cx) derivatives was evaluated by ab...

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<i>Ab initio</i> thermodynamic modeling of distal multisite transcription regulation

Leonor Saiz and Jose M. G. Vilar.

in Nucleic Acids Research

February 2008; p ublished online December 2007 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 4380 words.

Transcription regulation typically involves the binding of proteins over long distances on multiple DNA sites that are brought close to each other by the formation of DNA loops. The...

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Abasic Site Binding by the Human Apurinic Endonuclease, Ape, and Determination of the DNA Contact Sites

David M. Wilson, Masaru Takeshita and Bruce Demple.

in Nucleic Acids Research

March 1997; p ublished online March 1997 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 4712 words.

The mutagenic and lethal effects of abasic sites in DNA are averted by repair initiated by ‘class II’ apurinic (AP) endonucleases, which cleave immediately 5′; to abasic sites. We examined...

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Abasic site recognition mechanism by the <i>Escherichia coli</i> exonuclease III

Toshio Shida, Kouichi Kaneda, Tomoyoshi Ogawa and Junichi Sekiguchi.

in Nucleic Acids Symposium Series

November 1999; p ublished online November 1999 .

Journal Article. Subjects: Chemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 0 words.

In order to elucidate the mechanism of AP site recognition by Echerichia coli exonuclease III (exoIII), site-directed mutagenesis of the Tyr109, the Trp212, and the Phe213 residues, which...

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ABC model

Overview page. Subjects: Chemistry — Biological Sciences.

A model to explain the genetic control of floral organ determination during flower development. It proposes that the four principal organs – sepals, petals, stamens, and carpels – are...

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ABC transporter

Overview page. Subjects: Genetics and Genomics — Chemistry.

A family of proteins that span the plasma membranes of cells and function to transport specific molecules into or out of the cell. The name is an abbreviation of ATP-Binding Cassette. ABC...

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