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An ABC Method for Estimating the Rate and Distribution of Effects of Beneficial Mutations

Jorge A. Moura de Sousa, Paulo R.A. Campos and Isabel Gordo.

in Genome Biology and Evolution

January 2013; p ublished online March 2013 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 7289 words.

Determining the distribution of adaptive mutations available to natural selection is a difficult task. These are rare events and most of them are lost by chance. Some theoretical works...

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Abundant Degenerate Miniature Inverted-Repeat Transposable Elements in Genomes of Epichloid Fungal Endophytes of Grasses

Damien J. Fleetwood, Anar K. Khan, Richard D. Johnson, Carolyn A. Young, Shipra Mittal, Ruth E. Wrenn, Uljana Hesse, Simon J. Foster, Christopher L. Schardl and Barry Scott.

in Genome Biology and Evolution

January 2011; p ublished online September 2011 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 7668 words.

Miniature inverted-repeat transposable elements (MITEs) are abundant repeat elements in plant and animal genomes; however, there are few analyses of these elements in fungal genomes....

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Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within <i>Saccharomyces cerevisiae</i>

Andrea Hodgins-Davis, Aleksandra B. Adomas, Jonas Warringer and Jeffrey P. Townsend.

in Genome Biology and Evolution

January 2012; p ublished online September 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 11569 words.

Genetic variation for plastic phenotypes potentially contributes phenotypic variation to populations that can be selected during adaptation to novel ecological contexts. However, the basis...

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Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae

Andrea Hodgins-Davis, Aleksandra B. Adomas, Jonas Warringer and Jeffrey P. Townsend.

in Genome Biology and Evolution

January 2012; p ublished online November 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 103 words.

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Abundant Indispensable Redundancies in Cellular Metabolic Networks

Zhi Wang and Jianzhi Zhang.

in Genome Biology and Evolution

January 2009; p ublished online April 2009 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 8442 words.

Cellular life is a highly redundant complex system; yet, the evolutionary maintenance of the redundancy remains unexplained. Using a systems biology approach, we infer that 37–47% of...

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Accelerated Evolution of Schistosome Genes Coding for Proteins Located at the Host–Parasite Interface

Gisele S. Philippsen, R. Alan Wilson and Ricardo DeMarco.

in Genome Biology and Evolution

P ublished online January 2015 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 8554 words.

Study of proteins located at the host–parasite interface in schistosomes might provide clues about the mechanisms utilized by the parasite to escape the host immune system attack....

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Accumulation and Rapid Decay of Non-LTR Retrotransposons in the Genome of the Three-Spine Stickleback

Eryn Blass, Michael Bell and Stéphane Boissinot.

in Genome Biology and Evolution

January 2012; p ublished online April 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 6708 words.

The diversity and abundance of non–long terminal repeat (LTR) retrotransposons (nLTR-RT) differ drastically among vertebrate genomes. At one extreme, the genome of placental mammals is...

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The Accumulation of Gene Regulation Through Time

Maria Warnefors and Adam Eyre-Walker.

in Genome Biology and Evolution

January 2011; p ublished online March 2011 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 3086 words.

Gene expression is governed by an intricate combination of transcription factors (TFs), microRNAs (miRNAs), splicing factors, and other regulators. Genes cannot support infinitely complex...

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Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies

Roy N. Platt, Laura Blanco-Berdugo and David A. Ray.

in Genome Biology and Evolution

P ublished online January 2016 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 5034 words.

Transposable elements (TEs) are mobile genetic elements with the ability to replicate themselves throughout the host genome. In some taxa TEs reach copy numbers in hundreds of thousands and...

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Acetic Acid Bacteria Genomes Reveal Functional Traits for Adaptation to Life in Insect Guts

Bessem Chouaia, Stefano Gaiarsa, Elena Crotti, Francesco Comandatore, Mauro Degli Esposti, Irene Ricci, Alberto Alma, Guido Favia, Claudio Bandi and Daniele Daffonchio.

in Genome Biology and Evolution

P ublished online March 2014 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 3514 words.

Acetic acid bacteria (AAB) live in sugar rich environments, including food matrices, plant tissues, and the gut of sugar-feeding insects. By comparing the newly sequenced genomes of Asaia...

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