Oxford Index Search Results

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BamHI

Overview page. Subjects: Chemistry.

A type 2 restriction endonuclease; recognition sequence: G↑GATCC. The M.BamHI modification site is C5.

See overview in Oxford Index

BamHI

Overview page. Subjects: Chemistry.

A type 2 restriction endonuclease; recognition sequence: G↑GATCC. The M.BamHI modification site is C5.

See overview in Oxford Index

<i>Bam</i>HI

Edited by Richard Cammack, Teresa Atwood, Peter Campbell, Howard Parish, Anthony Smith, Frank Vella and John Stirling.

in Oxford Dictionary of Biochemistry and Molecular Biology

January 2006; p ublished online January 2008 .

Reference Entry. Subjects: Biochemistry. 15 words.

a type 2 restriction endonuclease; recognition sequence: G↑GATCC. The M.BamHI modification site is C5.

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Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI

Éva Scheuring Vanamee, Hector Viadiu, Siu-Hong Chan, Ajay Ummat, Adrian M. Hartline, Shuang-yong Xu and Aneel K. Aggarwal.

in Nucleic Acids Research

January 2011; p ublished online September 2010 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 4279 words.

Restriction enzymes share little or no sequence homology with the exception of isoschizomers, or enzymes that recognize and cleave the same DNA sequence. We present here the structure of a...

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Protein engineering of BamHI restriction endonuclease: replacement of Cys54 by Ala enhances catalytic activity.

P Mukhopadhyay and K B Roy.

in Protein Engineering, Design and Selection

October 1998; p ublished online October 1998 .

Journal Article. Subjects: Proteins. 0 words.

Chemical modification studies of BamHI endonuclease indicated the importance of the cysteine residue in catalysis [Nath, K. (1981) Arch. Biochem. Biophys, 212, 611-617]. Of the three...

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Reinvestigation of the Molecular Influence of Hypoxanthine on the DNA Cleavage Efficiency of Restriction Endonucleases BglII, EcoRI and BamHI

Akihiro Doi, Seung Pil Pack, Tsutomu Kodaki and Keisuke Makino.

in The Journal of Biochemistry

August 2009; p ublished online April 2009 .

Journal Article. Subjects: Biochemistry. 4296 words.

Hypoxanthine (Hyp), a deaminated base of adenine (Ade), can be employed as a good probe molecule to reveal the significance of the minor groove of guanine (Gua) in biomolecular interactions...

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Antibody and Antibody-Dependent Cellular Cytotoxicity Responses against the <i>Bam</i>HI A Rightward Open-Reading Frame-1 Protein of Epstein-Barr Virus (EBV) in EBV-Associated Disorders

J. E. Tanner, M. X. Wei, C. Alfieri, A. Ahmad, P. Taylor, T. Ooka and J. Menezes.

in The Journal of Infectious Diseases

January 1997; p ublished online January 1997 .

Journal Article. Subjects: Infectious Diseases; Immunology; Public Health and Epidemiology; Microbiology. 0 words.

Antibody-dependent cellular cytotoxicity (ADCC) is an important antiviral effector mechanism. ADCC to the protein encoded by the Epstein-Barr virus (EBV) BamHI A rightward open-reading...

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Modulation of DNA-mediated hole transport efficiency by DNA-protein complex formation

Chikara Dohno, Kazuhiko Nakatani and Isao Saito.

in Nucleic Acids Symposium Series

November 2001; p ublished online November 2001 .

Journal Article. Subjects: Chemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 0 words.

To investigate how protein interactions to DNA affects DNA-mediated hole transport, hole transport through the DNA bound to restriction endonuclease BamHI was examined. The DNA bound to Bamnull...

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restitution nucleus

Robert C. King, William D. Stansfield and Pamela K. Mulligan.

in A Dictionary of Genetics

January 2007; p ublished online January 2007 .

Reference Entry. Subjects: Genetics and Genomics. 176 words.

1. BamHI Bacillus amyloliquefaciens ↓ 5′ … G-G-A-T-C-C … 3′ 3′ … C-C-T-A-G-G … 5′ ↑ EcoRI Escherichia

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replacement vector

Overview page. Subjects: Chemistry.

A cloning vector in which part of the normal genome is replaced by foreign DNA. For example, the lambda phage EMBL4 contains only two BamHI cleavage sites and so the ...

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A helicase gene (<i>helO</i>) in <i>Rhizobium meliloti</i> WSM419

Wayne G Reeve, Ravi P Tiwari, Michael J Dilworth and Andrew R Glenn.

in FEMS Microbiology Letters

August 1997; p ublished online January 2006 .

Journal Article. 3018 words.

Abstract

A 2.8 kb Bam HI DNA fragment adjacent to a Bam HI fragment containing actR-actS (a sensor/regulator pair required for low pH tolerance in Rhizobium...

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Triplex-Forming Oligonucleotides Trigger Conformation Changes of a Target Hairpin Sequence

Elena Brossalina, Elena Demchenko, Yulija Demchenko, Valentin Vlassov and Jean-Jacques Toulm.

in Nucleic Acids Research

September 1996; p ublished online September 1996 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3909 words.

We used a DNA duplex formed between the 5′ end of a 69mer (69T) and an 11mer (OL7) as a substrate for BamHI. The former oligonucleotide folds into a hairpin structure, the stem of which...

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<i>Trans</i>-Splicing and Alternative-Tandem-<i>Cis</i>-Splicing: Two Ways by Which Mammalian Cells Generate a Truncated SV40 T-Antigen

J. Eul, M. Graessmann and A. Graessmann.

in Nucleic Acids Research

May 1996; p ublished online May 1996 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 6617 words.

The early SV40 BstXI-BamHI (Bst/Bam) DNA fragment encodes exclusively for the second exon of the large T-antigen and contains the intact small t-antigen intron. Rat cells transformed by the...

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restitution nucleus

Overview page. Subjects: Genetics and Genomics.

1. BamHI Bacillus amyloliquefaciens↓5′ … G-G-A-T-C-C … 3′3′ … C-C-T-A-G-G … 5′↑EcoRI Escherichia coli RY13↓*5′ … G-A-A-T-T-C … 3′3′ … C-T-T-A-A-G … 5′↑HindII Hemoph...

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Restriction enzymes increase efficiencies of illegitimate DNA integration but decrease homologous integration in mammalian cells

Palaniyandi Manivasakam, Jiri Aubrecht, Samy Sidhom and Robert H. Schiestl.

in Nucleic Acids Research

December 2001; p ublished online December 2001 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 6619 words.

Mammalian cells repair DNA double-strand breaks by illegitimate end-joining or by homologous recombination. We investigated the effects of restriction enzymes on illegitimate and homologous...

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DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway

Bram van den Broek, Maarten C. Noom and Gijs J. L. Wuite.

in Nucleic Acids Research

January 2005; p ublished online January 2005 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 6604 words.

Type II restriction endonucleases protect bacteria against phage infections by cleaving recognition sites on foreign double-stranded DNA (dsDNA) with extraordinary specificity. This...

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Trapping DNA–protein binding reactions with neutral osmolytes for the analysis by gel mobility shift and self-cleavage assays

Nina Y. Sidorova, Shakir Muradymov and Donald C. Rau.

in Nucleic Acids Research

January 2005; p ublished online January 2005 .

Journal Article. Subjects: Proteins; Molecular Biology and Genetics. 8684 words.

We take advantage of our previous observation that neutral osmolytes can strongly slow down the rate of DNA–protein complex dissociation to develop a method that uses osmotic stress to...

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Symmetry elements in DNA structure important for recognition/methylation by DNA [amino]-methyltransferases

Victor V. Zinoviev, S. I. Yakishchik, Alexey A. Evdokimov, Ernst G. Malygin and Stanley Hattman.

in Nucleic Acids Research

January 2004; p ublished online January 2004 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3468 words.

The phage T4Dam and EcoDam DNA-[adenine-N6] methyltransferases (MTases) methylate GATC palindromic sequences, while the BamHI DNA-[cytosine-N4] MTase methylates the GGATCC palindrome (which...

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Molecular evolution of DNA-(cytosine-N4) methyItransferases: evidence for their polyphyletic origin

Janusz M. Bujnicki and Monika Radlinska.

in Nucleic Acids Research

November 1999; p ublished online November 1999 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 4961 words.

DNA N4-cytosine methyltransferases (N4mC MTases) are a family of S-adenosyl-L-methionine (AdoMet)-dependent MTases. Members of this family were previously found to share nine conserved...

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Analysis of Unique Variable Region of a Plant Root Inducing Plasmid, pRi1724, by the Construction of its Physical Map and Library

Kazuki Moriguchi, Yasunobu Maeda, Megumi Satou, Miho Kataoka, Nobukazu Tanaka and Kazuo Yoshida.

in DNA Research

January 2000; p ublished online January 2000 .

Journal Article. Subjects: Genetics and Genomics. 0 words.

Ri plasmids in Agrobacterium rhizogenes specifically induce the hairy root syndrome on various dicotyledonous plants. Its T-DNA transfer system as well as those of Ti plasmids have...

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Construction of a new cloning vector utilizing a cryptic plasmid and the highly expressed melanin-synthesizing gene operon from <i>Streptomyces castaneoglobisporus</i>

Kayo Ikeda, Koji Suzuki, Hideki Yoshioka, Katsushiro Miyamoto, Tsutomu Masujima and Masanori Sugiyama.

in FEMS Microbiology Letters

November 1998; p ublished online January 2006 .

Journal Article. 1557 words.

Abstract

Streptomyces castaneoglobisporus HUT6202 overproduces a diffusible melanin pigment and harbors a cryptic 7.4-kb plasmid, pHY6202. We...

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