Journal Article

VistaClara: an expression browser plug-in for Cytoscape

Robert Kincaid, Allan Kuchinsky and Michael Creech

in Bioinformatics

Volume 24, issue 18, pages 2112-2114
Published in print September 2008 | ISSN: 1367-4803
Published online August 2008 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btn368

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Summary: VistaClara is a plug-in for Cytoscape which provides a more flexible means to visualize gene and protein expression within a network context. An extended attribute browser is provided in the form of a graphical and interactive permutation matrix that resembles the heat map displays popular in gene-expression analysis. This extended browser permits a variety of display options and interactions not currently available in Cytoscape.

Availability: http://chianti.ucsd.edu/cyto_web/plugins/index.php

Contact: robert_kincaid@agilent.com

Journal Article.  1107 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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