Journal Article

MPSQ: a web tool for protein-state searching

Siyuan Zheng, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu and Yixue Li

in Bioinformatics

Volume 24, issue 20, pages 2412-2413
Published in print October 2008 | ISSN: 1367-4803
Published online August 2008 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btn427
MPSQ: a web tool for protein-state searching

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Summary: MPSQ (multi-protein-states query) is a web-based tool for the discovery of protein states (e.g. biological interactions, covalent modifications, cellular localizations). In particular, large sets of genes can be used to search for enriched state transition network maps (NMs) and features facilitating the interpretation of genomic-scale experiments such as microarrays. One NM collects all the catalogued states of a protein as well as the mutual transitions between the states. For the returned NM, graph visualization is provided for easy understanding and to guide further analysis.

Availability: MPSQ is freely available via the web at http://mpsq.biosino.org/.

Contact: phao@sibs.ac.cn; liulei@scbit.org; yxli@sibs.ac.cn

Journal Article.  1359 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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