Journal Article

A toolkit for analysing large-scale plant small RNA datasets

Simon Moxon, Frank Schwach, Tamas Dalmay, Dan MacLean, David J. Studholme and Vincent Moulton

in Bioinformatics

Volume 24, issue 19, pages 2252-2253
Published in print October 2008 | ISSN: 1367-4803
Published online August 2008 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btn428
A toolkit for analysing large-scale plant small RNA datasets

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Summary: Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

Availability: The tools are freely available for use at http://srna-tools.cmp.uea.ac.uk

Contact: vincent.moulton@cmp.uea.ac.uk

Journal Article.  1376 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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