Journal Article

OmicsViz: Cytoscape plug-in for visualizing omics data across species

Tian Xia and Julie A. Dickerson

in Bioinformatics

Volume 24, issue 21, pages 2557-2558
Published in print November 2008 | ISSN: 1367-4803
Published online September 2008 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btn473

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Motivation: OmicsViz is a Cytoscape plug-in for mapping and visualizing large-scale omics datasets across species, including those with many-to-many mappings between homologs. This allows users to map their data onto pathways of related model organisms. Mapping schemas across species or different experimental protocols allow users to comparatively analyze the omics data. The data can also be visualized in parallel-coordinate plots.

Availability: The latest version of OmicsViz with documentation, tutorial and jar files can be downloaded from http://metnet.vrac.iastate.edu/MetNet_fcmodeler.htm

Contact: julied@iastate.edu

Journal Article.  974 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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