Journal Article

D<span class="smallCaps">ockground</span> protein–protein docking decoy set

Shiyong Liu, Ying Gao and Ilya A. Vakser

in Bioinformatics

Volume 24, issue 22, pages 2634-2635
Published in print November 2008 | ISSN: 1367-4803
Published online September 2008 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btn497
Dockground protein–protein docking decoy set

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Summary: A protein–protein docking decoy set is built for the Dockground unbound benchmark set. The GRAMM-X docking scan was used to generate 100 non-native and at least one near-native match per complex for 61 complexes. The set is a publicly available resource for the development of scoring functions and knowledge-based potentials for protein docking methodologies.

Availability: The decoys are freely available for download at http://dockground.bioinformatics.ku.edu/UNBOUND/decoy/decoy.php

Contact: vakser@ku.edu

Journal Article.  1241 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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