Journal Article

Selection of oligonucleotides for whole-genome microarrays with semi-automatic update

G. Golfier, S. Lemoine, A. van Miltenberg, A. Bendjoudi, J. Rossier, S. Le Crom and M.-C. Potier

in Bioinformatics

Volume 25, issue 1, pages 128-129
Published in print January 2009 | ISSN: 1367-4803
Published online November 2008 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btn573

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Summary: Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections of long oligonucleotides and applied it to the mouse RefSeq database.

Availability: http://www.bio.espci.fr/sol/

Contact: marie-claude.potier@espci.fr

Supplementary information: Supplementary data are available at http://www.bio.espci.fr/sol/

Journal Article.  1174 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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