Journal Article

DNAPlotter: circular and linear interactive genome visualization

Tim Carver, Nick Thomson, Alan Bleasby, Matthew Berriman and Julian Parkhill

in Bioinformatics

Volume 25, issue 1, pages 119-120
Published in print January 2009 | ISSN: 1367-4803
Published online November 2008 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btn578

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Summary: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages.

Availability: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/

Contact: artemis@sanger.ac.uk

Journal Article.  889 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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