Journal Article

Prequips—an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

Nils Gehlenborg, Wei Yan, Inyoul Y. Lee, Hyuntae Yoo, Kay Nieselt, Daehee Hwang, Ruedi Aebersold and Leroy Hood

in Bioinformatics

Volume 25, issue 5, pages 682-683
Published in print March 2009 | ISSN: 1367-4803
Published online January 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp005
Prequips—an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

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Summary: We describe an integrative software platform, Prequips, for comparative proteomics-based systems biology analysis that: (i) integrates all information generated from mass spectrometry (MS)-based proteomics as well as from basic proteomics data analysis tools, (ii) visualizes such information for various proteomic analyses via graphical interfaces and (iii) links peptide and protein abundances to external tools often used in systems biology studies.

Availability: http://prequips.sourceforge.net

Contact: dhhwang@postech.ac.kr

Journal Article.  1349 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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