Journal Article

FrameDP: sensitive peptide detection on noisy matured sequences

Jérôme Gouzy, Sébastien Carrere and Thomas Schiex

in Bioinformatics

Volume 25, issue 5, pages 670-671
Published in print March 2009 | ISSN: 1367-4803
Published online January 2009 | e-ISSN: 1460-2059 | DOI:

More Like This

Show all results sharing this subject:

  • Bioinformatics and Computational Biology


Show Summary Details


Summary: Transcriptome sequencing represents a fundamental source of information for genome-wide studies and transcriptome analysis and will become increasingly important for expression analysis as new sequencing technologies takes over array technology. The identification of the protein-coding region in transcript sequences is a prerequisite for systematic amino acid-level analysis and more specifically for domain identification. In this article, we present FrameDP, a self-training integrative pipeline for predicting CDS in transcripts which can adapt itself to different levels of sequence qualities.

Availability: FrameDP for Linux (web-server and underlying pipeline) is available at {{}} for direct use or a standalone installation.


Journal Article.  1338 words. 

Subjects: Bioinformatics and Computational Biology

Users without a subscription are not able to see the full content. Please, subscribe or login to access all content.