Journal Article

Jalview Version 2—a multiple sequence alignment editor and analysis workbench

Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michèle Clamp and Geoffrey J. Barton

in Bioinformatics

Volume 25, issue 9, pages 1189-1191
Published in print May 2009 | ISSN: 1367-4803
Published online January 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp033

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Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org

Contact: g.j.barton@dundee.ac.uk

Journal Article.  2158 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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