Journal Article

CPSP-web-tools: a server for 3D lattice protein studies

Martin Mann, Cameron Smith, Mohamad Rabbath, Marlien Edwards, Sebastian Will and Rolf Backofen

in Bioinformatics

Volume 25, issue 5, pages 676-677
Published in print March 2009 | ISSN: 1367-4803
Published online January 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp034

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Summary: Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and related problems in 3D HP-models [cubic and face centered cubic (FCC)]. Here, we present CPSP-web-tools, an interactive online interface of these programs for their immediate use. They include the first method for the direct prediction of optimal energies and structures in 3D HP side-chain models. This newest extension of the CPSP approach is described here for the first time.

Availability and Implementation: Free access at http://cpsp.informatik.uni-freiburg.de

Contact: cpsp@informatik.uni-freiburg.de; cpsp@informatik.uni-freiburg.de

Journal Article.  1534 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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