Journal Article

NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results

Jacques Lagnel, Costas S. Tsigenopoulos and Ioannis Iliopoulos

in Bioinformatics

Volume 25, issue 6, pages 824-826
Published in print March 2009 | ISSN: 1367-4803
Published online January 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp067
NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results

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Summary: NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria.

Availability: A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST.

Contact: lagnel@her.hcmr.gr; ioannis@iti.gr

Supplementary information: Supplementary data are available at Bioinformatics online.

Journal Article.  1253 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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