Journal Article

DIYA: a bacterial annotation pipeline for any genomics lab

Andrew C. Stewart, Brian Osborne and Timothy D. Read

in Bioinformatics

Volume 25, issue 7, pages 962-963
Published in print April 2009 | ISSN: 1367-4803
Published online March 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp097

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Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output.

Availability: Distribution and source code are available at (https://sourceforge.net/projects/diyg/).

Contact: tread@emory.edu

Supplementary information: Supplementary data are available at Bioinformatics online.

Journal Article.  1328 words. 

Subjects: Bioinformatics and Computational Biology

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