Journal Article

Infernal 1.0: inference of RNA alignments

Eric P. Nawrocki, Diana L. Kolbe and Sean R. Eddy

in Bioinformatics

Volume 25, issue 10, pages 1335-1337
Published in print May 2009 | ISSN: 1367-4803
Published online March 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp157
Infernal 1.0: inference of RNA alignments

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Summary: infernal builds consensus RNA secondary structure profiles called covariance models (CMs), and uses them to search nucleic acid sequence databases for homologous RNAs, or to create new sequence- and structure-based multiple sequence alignments.

Availability: Source code, documentation and benchmark downloadable from http://infernal.janelia.org. infernal is freely licensed under the GNU GPLv3 and should be portable to any POSIX-compliant operating system, including Linux and Mac OS/X.

Contact: nawrockie,kolbed,eddys@janelia.hhmi.org

Journal Article.  1608 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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