Journal Article

CROC: finding chromosomal clusters in eukaryotic genomes

Miguel Pignatelli, Florenci Serras, Andrés Moya, Roderic Guigó and Montserrat Corominas

in Bioinformatics

Volume 25, issue 12, pages 1552-1553
Published in print June 2009 | ISSN: 1367-4803
Published online April 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp248
CROC: finding chromosomal clusters in eukaryotic genomes

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Summary: There is increasing evidence showing that co-expression of genes that cluster along the genome is a common characteristic of eukaryotic transcriptomes. Several algorithms have been used to date in the identification of these kinds of gene organization. Here, we present a web tool called CROC that aims to help in the identification and analysis of genomic gene clusters. This method has been successfully used before in the identification of chromosomal clusters in different eukaryotic species.

Availability: The web server is freely available to non-commercial users at the following address: http://metagenomics.uv.es/CROC/

Contact: miguel.pignatelli@uv.es

Journal Article.  1264 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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