Journal Article

Generating linkage mapping files from Affymetrix SNP chip data

M. Bahlo and C. J. Bromhead

in Bioinformatics

Volume 25, issue 15, pages 1961-1962
Published in print August 2009 | ISSN: 1367-4803
Published online May 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp313
Generating linkage mapping files from Affymetrix SNP chip data

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Summary: LINKDATAGEN is a perl tool that generates linkage mapping input files for five different linkage mapping tools using data from all 11 HAPMAP Phase III populations. It provides rudimentary error checks and is easily amended for personal linkage mapping preferences.

Availabilitiy and Implementation: LINKDATAGEN is available from http://bioinf.wehi.edu.au/software/linkdatagen/ with accompanying annotation files, reference manual and test dataset.

Contact: bahlo@wehi.edu.au

Journal Article.  1606 words. 

Subjects: Bioinformatics and Computational Biology

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