Journal Article

Importing ArrayExpress datasets into R/Bioconductor

Audrey Kauffmann, Tim F. Rayner, Helen Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brazma and Wolfgang Huber

in Bioinformatics

Volume 25, issue 16, pages 2092-2094
Published in print August 2009 | ISSN: 1367-4803
Published online June 2009 | e-ISSN: 1460-2059 | DOI: https://dx.doi.org/10.1093/bioinformatics/btp354

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Summary:ArrayExpress is one of the largest public repositories of microarray datasets. R/Bioconductor provides a comprehensive suite of microarray analysis and integrative bioinformatics software. However, easy ways for importing datasets from ArrayExpress into R/Bioconductor have been lacking. Here, we present such a tool that is suitable for both interactive and automated use.

Availability: The ArrayExpress package is available from the Bioconductor project at http://www.bioconductor.org. A users guide and examples are provided with the package.

Contact: audrey@ebi.ac.uk

Supplementary information:Supplementary data are available Bioinformatics online.

Journal Article.  1492 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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