Journal Article

Reordering contigs of draft genomes using the Mauve Aligner

Anna I. Rissman, Bob Mau, Bryan S. Biehl, Aaron E. Darling, Jeremy D. Glasner and Nicole T. Perna

in Bioinformatics

Volume 25, issue 16, pages 2071-2073
Published in print August 2009 | ISSN: 1367-4803
Published online June 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp356

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Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results.

Availability: The software is available for download at http://gel.ahabs.wisc.edu/mauve.

Contact: rissman@wisc.edu

Supplementary information: Supplementary data are available at Bioinformatics online and http://gel.ahabs.wisc.edu

Journal Article.  1739 words. 

Subjects: Bioinformatics and Computational Biology

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