Journal Article

SNP-o-matic

Heinrich Magnus Manske and Dominic P. Kwiatkowski

in Bioinformatics

Volume 25, issue 18, pages 2434-2435
Published in print September 2009 | ISSN: 1367-4803
Published online July 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp403

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Motivation: High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient and stringent read mapping tool offering a variety of analytical output functions, with an emphasis on genotyping.

Availability: http://snpomatic.sourceforge.net

Contact: mm6@sanger.ac.uk

Supplementary information: Supplementary data are available at Bioinformatics online.

Journal Article.  1715 words. 

Subjects: Bioinformatics and Computational Biology

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