Journal Article

FBA-SimVis: interactive visualization of constraint-based metabolic models

Eva Grafahrend-Belau, Christian Klukas, Björn H. Junker and Falk Schreiber

in Bioinformatics

Volume 25, issue 20, pages 2755-2757
Published in print October 2009 | ISSN: 1367-4803
Published online July 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp408

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Summary: FBA-SimVis is a VANTED plug-in for the constraint-based analysis of metabolic models with special focus on the visual exploration of metabolic flux data resulting from model analysis. The program provides a user-friendly environment for model reconstruction, constraint-based model analysis, and interactive visualization of the simulation results. With the ability to quantitatively analyse metabolic fluxes in an interactive and visual manner, FBA-SimVis supports a comprehensive understanding of constraint-based metabolic flux models in both overview and detail.

Availability: Software with manual and tutorials are freely available at http://fbasimvis.ipk-gatersleben.de/

Contact: grafahr@ipk-gatersleben.de

Supplementary information: Examples and supplementary data are available at http://fbasimvis.ipk-gatersleben.de/

Journal Article.  1826 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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