Journal Article

SnoopCGH: software for visualizing comparative genomic hybridization data

Jacob Almagro-Garcia, Magnus Manske, Celine Carret, Susana Campino, Sarah Auburn, Bronwyn L MacInnis, Gareth Maslen, Arnab Pain, Christopher I Newbold, Dominic P Kwiatkowski and Taane G Clark

in Bioinformatics

Volume 25, issue 20, pages 2732-2733
Published in print October 2009 | ISSN: 1367-4803
Published online August 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp488

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Summary: Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data.

Availability and implementation: SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/

Contact: jg10@sanger.ac.uk; tc5@sanger.ac.uk

Journal Article.  1277 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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