Journal Article

Next generation software for functional trend analysis

Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan and Frederick P. Roth

in Bioinformatics

Volume 25, issue 22, pages 3043-3044
Published in print November 2009 | ISSN: 1367-4803
Published online August 2009 | e-ISSN: 1460-2059 | DOI: https://dx.doi.org/10.1093/bioinformatics/btp498
Next generation software for functional trend analysis

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Summary: FuncAssociate is a web application that discovers properties enriched in lists of genes or proteins that emerge from large-scale experimentation. Here we describe an updated application with a new interface and several new features. For example, enrichment analysis can now be performed within multiple gene- and protein-naming systems. This feature avoids potentially serious translation artifacts to which other enrichment analysis strategies are subject.

Availability: The FuncAssociate web application is freely available to all users at http://llama.med.harvard.edu/funcassociate.

Contact: fritz_roth@hms.harvard.edu

Journal Article.  1550 words. 

Subjects: Bioinformatics and Computational Biology

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