Journal Article

ERNEST: a toolbox for chemical reaction network theory

Nicola Soranzo and Claudio Altafini

in Bioinformatics

Volume 25, issue 21, pages 2853-2854
Published in print November 2009 | ISSN: 1367-4803
Published online August 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp513
ERNEST: a toolbox for chemical reaction network theory

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Summary: ERNEST Reaction Network Equilibria Study Toolbox is a MATLAB package which, by checking various different criteria on the structure of a chemical reaction network, can exclude the multistationarity of the corresponding reaction system. The results obtained are independent of the rate constants of the reactions, and can be used for model discrimination.

Availability and Implementation: The software, implemented in MATLAB, is available under the GNU GPL free software license from http://people.sissa.it/∼altafini/papers/SoAl09/. It requires the MATLAB Optimization Toolbox.

Contact: altafini@sissa.it

Journal Article.  1283 words. 

Subjects: Bioinformatics and Computational Biology

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