Journal Article

sORF finder: a program package to identify small open reading frames with high coding potential

Kousuke Hanada, Kenji Akiyama, Tetsuya Sakurai, Tetsuro Toyoda, Kazuo Shinozaki and Shin-Han Shiu

in Bioinformatics

Volume 26, issue 3, pages 399-400
Published in print February 2010 | ISSN: 1367-4803
Published online December 2009 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btp688
sORF finder: a program package to identify small open reading frames with high coding potential

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Summary: sORF finder is a program package for identifying small open reading frames (sORFs) with high-coding potential. This application allows the identification of coding sORFs according to the nucleotide composition bias among coding sequences and the potential functional constraint at the amino acid level through evaluation of synonymous and non-synonymous substitution rates.

Availability: Online tools and source codes are freely available at http://evolver.psc.riken.jp/

Contact: kohanada@psc.riken.jp

Supplementary information: Supplementary data are available at Bioinformatics online.

Journal Article.  1602 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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