Journal Article

Phybase: an R package for species tree analysis

Liang Liu and Lili Yu

in Bioinformatics

Volume 26, issue 7, pages 962-963
Published in print April 2010 | ISSN: 1367-4803
Published online February 2010 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btq062
Phybase: an R package for species tree analysis

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Motivation: Phybase is an R package for phylogenetic analysis using species trees. It provides functions to read, write, manipulate, simulate, estimate, summarize and plot species trees, which contain not only the topology and branch lengths but also population sizes.

Availability: The Phybase package is available at the R repository. The manual and supporting materials including source code, sample R code and sample data files for the species tree analysis are available at http://stat.osu.edu/∼liuliang/research/phybase.html

Contact: lliu@desu.edu

Journal Article.  1269 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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