Journal Article

An Ergatis-based prokaryotic genome annotation web server

Chris Hemmerich, Aaron Buechlein, Ram Podicheti, Kashi V. Revanna and Qunfeng Dong

in Bioinformatics

Volume 26, issue 8, pages 1122-1124
Published in print April 2010 | ISSN: 1367-4803
Published online March 2010 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btq090
An Ergatis-based prokaryotic genome annotation web server

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Summary: Ergatis is a flexible workflow management system for designing and executing complex bioinformatics pipelines. However, its complexity restricts its usage to only highly skilled bioinformaticians. We have developed a web-based prokaryotic genome annotation server, Integrative Services for Genomics Analysis (ISGA), which builds upon the Ergatis workflow system, integrates other dynamic analysis tools and provides intuitive web interfaces for biologists to customize and execute their own annotation pipelines. ISGA is designed to be installed at genomics core facilities and be used directly by biologists.

Availability: ISGA is accessible at http://isga.cgb.indiana.edu/ and the system is also freely available for local installation.

Contact: qunfeng.dong@unt.edu

Supplementary information:Supplementary data are available at Bioinformatics online.

Journal Article.  2099 words. 

Subjects: Bioinformatics and Computational Biology

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