Journal Article

PanCGHweb: a web tool for genotype calling in pangenome CGH data

Jumamurat R. Bayjanov, Roland J. Siezen and Sacha A. F. T. van Hijum

in Bioinformatics

Volume 26, issue 9, pages 1256-1257
Published in print May 2010 | ISSN: 1367-4803
Published online March 2010 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btq103

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Summary: A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data.

Availability: PanCGHweb, the web tool is accessible from: http://bamics2.cmbi.ru.nl/websoftware/pancgh/

Contact: sacha.vanhijum@nizo.nl

Journal Article.  1013 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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