Journal Article

ArchSchema: a tool for interactive graphing of related Pfam domain architectures

Asif U. Tamuri and Roman A. Laskowski

in Bioinformatics

Volume 26, issue 9, pages 1260-1261
Published in print May 2010 | ISSN: 1367-4803
Published online March 2010 | e-ISSN: 1460-2059 | DOI: http://dx.doi.org/10.1093/bioinformatics/btq119
ArchSchema: a tool for interactive graphing of related Pfam domain architectures

More Like This

Show all results sharing this subject:

  • Bioinformatics and Computational Biology

GO

Show Summary Details

Preview

Summary: ArchSchema is a Java Web Start application that generates a dynamic 2D network of related Pfam domain architectures. Each node corresponds to a different architecture (shown as a sequence of coloured boxes) and indicates whether any 3D structural information is available in the PDB. Satellite nodes can show either the UniProt codes or the PDB codes of proteins having the given architecture. Search options allow search by UniProt code or Pfam domain identifier, and results can be filtered by domain, organism, or by selecting only proteins in the PDB.

Availability: ArchSchema can be freely accessed at http://www.ebi.ac.uk/Tools/archschema

Contact: roman@ebi.ac.uk

Journal Article.  1292 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

Full text: subscription required

How to subscribe Recommend to my Librarian

Users without a subscription are not able to see the full content. Please, subscribe or login to access all content.