Journal Article

ModeRNA server: an online tool for modeling RNA 3D structures

Magdalena Rother, Kaja Milanowska, Tomasz Puton, Jaroslaw Jeleniewicz, Kristian Rother and Janusz M. Bujnicki

in Bioinformatics

Volume 27, issue 17, pages 2441-2442
Published in print September 2011 | ISSN: 1367-4803
Published online July 2011 | e-ISSN: 1460-2059 | DOI:
ModeRNA server: an online tool for modeling RNA 3D structures

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Summary: The diverse functional roles of non-coding RNA molecules are determined by their underlying structure. ModeRNA server is an online tool for RNA 3D structure modeling by the comparative approach, based on a template RNA structure and a user-defined target-template sequence alignment. It offers an option to search for potential templates, given the target sequence. The server also provides tools for analyzing, editing and formatting of RNA structure files. It facilitates the use of the ModeRNA software and offers new options in comparison to the standalone program.

Availability and implementation: ModeRNA server was implemented using the Python language and the Django web framework. It is freely available at


Journal Article.  1083 words.  Illustrated.

Subjects: Bioinformatics and Computational Biology

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