Journal Article

Common variation in <i>BRCA2</i> and breast cancer risk: a haplotype-based analysis in the Multiethnic Cohort

Matthew L. Freedman, Kathryn L. Penney, Daniel O. Stram, Loïc Le Marchand, Joel N. Hirschhorn, Laurence N. Kolonel, David Altshuler, Brian E. Henderson and Christopher A. Haiman

in Human Molecular Genetics

Volume 13, issue 20, pages 2431-2441
Published in print October 2004 | ISSN: 0964-6906
Published online August 2004 | e-ISSN: 1460-2083 | DOI:
Common variation in BRCA2 and breast cancer risk: a haplotype-based analysis in the Multiethnic Cohort

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It is well established that rare mutations in BRCA2 predispose to familial breast cancer, but whether common variants at this locus contribute more modest risk to sporadic breast cancer has not been thoroughly investigated. We performed a haplotype-based study of BRCA2 among women in the Multiethnic Cohort Study (MEC), genotyping 50 SNPs spanning 109.4 kb of the BRCA2 gene. Twenty-one haplotype-tagging SNPs (including seven missense SNPs) were selected to predict the common BRCA2 haplotypes and were genotyped in a breast cancer case–control study nested in the MEC (cases, n=1715; controls, n=2502). Compared to non-carriers, we observed nominally significant positive associations for homozygous carriers of specific haplotypes in blocks 2 (haplotype 2c: OR=1.50; 95% CI, 1.08–2.09) and 3 (haplotype 3d: OR=1.50; 95% CI, 1.01–2.24). These results could be explained on the basis of a single marker in intron 24 (SNP 42: rs206340) that was correlated with these haplotypes and the homozygous state was associated with a significantly increased risk of breast cancer (AA versus GG genotypes: OR=1.59, 95% CI, 1.18–2.16; nominal P=0.005). This association was modestly stronger among women with advanced disease (OR=2.00, 95% CI, 1.30–3.08; P=0.002). In this exploratory analysis, we found little indication that common variation in BRCA2 dramatically impacts sporadic breast cancer risk. However, a significant elevation in risk was observed among ∼6% of women who carried a specific haplotype pattern and may harbor a susceptibility allele at the BRCA2 locus.

Journal Article.  7437 words.  Illustrated.

Subjects: Genetics and Genomics

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