Journal Article

TetraploidMap: Construction of a Linkage Map in Autotetraploid Species

C. A. Hackett and Z. W. Luo

in Journal of Heredity

Published on behalf of American Genetic Association

Volume 94, issue 4, pages 358-359
Published in print July 2003 | ISSN: 0022-1503
Published online July 2003 | e-ISSN: 1465-7333 | DOI: http://dx.doi.org/10.1093/jhered/esg066
TetraploidMap: Construction of a Linkage Map in Autotetraploid Species

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TetraploidMap is a suite of Fortran 90 routines run from Microsoft Windows with a text-based input and output. TetraploidMap enables the user to assemble a linkage map from dominant and codominant (multiallelic) marker loci scored for the parents and full-sib progeny of a cross in an autotetraploid species. It includes routines for the inference of the parental genotypes, identification of linkage groups, two-point analysis to estimate the recombination frequency and LOD score between all pairs of marker in a linkage group, and locus ordering by simulated annealing.

Journal Article.  1236 words. 

Subjects: Genetics and Genomics

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