Journal Article

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)

Tamotsu Noguchi, Hideo Matsuda and Yutaka Akiyama

in Nucleic Acids Research

Volume 29, issue 1, pages 219-220
Published in print January 2001 | ISSN: 0305-1048
Published online January 2001 | e-ISSN: 1362-4962 | DOI: http://dx.doi.org/10.1093/nar/29.1.219
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)

More Like This

Show all results sharing these subjects:

  • Chemistry
  • Biochemistry
  • Bioinformatics and Computational Biology
  • Genetics and Genomics
  • Molecular and Cell Biology

GO

Show Summary Details

Preview

PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB. The selection of representative chains can be dynamically configured according to the user’s requirement. The WWW interface provides a large degree of freedom in setting parameters, such as cut-off scores of sequence and structural similarity. One can obtain a representative list and classification data of protein chains from the system. The current database includes 20 457 protein chains from PDB entries (August 6, 2000). The system for PDB-REPRDB is available at the Parallel Protein Information Analysis system (PAPIA) WWW server (http://www.rwcp.or.jp/papia/).

Journal Article.  1240 words. 

Subjects: Chemistry ; Biochemistry ; Bioinformatics and Computational Biology ; Genetics and Genomics ; Molecular and Cell Biology

Full text: subscription required

How to subscribe Recommend to my Librarian

Users without a subscription are not able to see the full content. Please, subscribe or login to access all content.