base stacking

'base stacking' can also refer to...

base stacking

base stacking

base stacking

Guanine base stacking in G-quadruplex nucleic acids

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix

Towards global earth tomography using the spectral element method: a technique based on source stacking

Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips

Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelixAla variants

Large stacking stability of a base pair-mimic nucleotide on the DNA duplex

Classification of 3D structural character of RNA by hydrogen bond and base stacking

Limited-memory BFGS based least-squares pre-stack Kirchhoff depth migration

Free energy analysis and mechanism of base pair stacking in nicked DNA

STAR3D: a stack-based RNA 3D structural alignment tool

Local conformational variations observed in B-DNA crystals do not improve base stacking: computational analysis of base stacking in a d(CATGGGCCCATG)2 B↔A intermediate crystal structure

Classification of RNA Structures Based on Hydrogen Bond and Base-Base Stacking Patterns: Application for NMR Structures

2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects

Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion–base stacking interactions

Recognition of T·G mismatched base pairs in DNA by stacked imidazole-containing polyamides: surface plasmon resonance and circular dichroism studies

Molecular recognition of DNA base pairs by the formamido/pyrrole and formamido/imidazole pairings in stacked polyamides


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  • Genetics and Genomics
  • Chemistry


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Quick Reference

The orientation of adjacent base pairs with their planes parallel and with their surfaces nearly in contact, as occurs in double-stranded DNA molecules. Base stacking is caused by hydrophobic interactions between purine and pyrimidine bases, and results in maximum hydrogen bonding between complementary base pairs.

Subjects: Genetics and Genomics — Chemistry.

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