HMM [Airport Code]
Protein homology detection by HMM–HMM comparison
HHsenser: exhaustive transitive profile search using HMM–HMM comparison
Designing patterns for profile HMM search
HMM-Kalign: a tool for generating sub-optimal HMM alignments
Visualizing profile–profile alignment: pairwise HMM logos
Evolutionary HMMs: a Bayesian approach to multiple alignment
nhmmer: DNA homology search with profile HMMs
HHfrag: HMM-based fragment detection using HHpred
HMM-based databases in InterPro
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
GeneMark.hmm: New solutions for gene finding
SAM-T08, HMM-based protein structure prediction
Learning HMMs for nucleotide sequences from amino acid alignments
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1 heavy meromyosin.
2 hidden Markov model.
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