SCORE: predicting the core of protein models
A novel method for scoring of docked protein complexes using predicted protein–protein binding sites
New scoring schemes for protein fold recognition based on Voronoi contacts.
Developing optimal non-linear scoring function for protein design
Improved performance in protein secondary structure prediction by inhomogeneous score combination.
Fast protein fragment similarity scoring using a Binet–Cauchy kernel
Context similarity scoring improves protein sequence alignments in the midnight zone
An assessment of substitution scores for protein profile–profile comparison
A comparison of scoring functions for protein sequence profile alignment
Calculating and scoring high quality multiple flexible protein structure alignments
Protein binding site prediction using an empirical scoring function
Accelerated protein structure comparison using TM-score-GPU
A simple probabilistic scoring method for protein domain
A new protein–protein docking scoring function based on interface residue properties
Combining multiple positive training sets to generate confidence scores for protein–protein interactions
FastContact: a free energy scoring tool for protein–protein complex structures
DrugScorePPI webserver: fast and accurate in silico alanine scanning for scoring protein–protein interactions
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A measure of protein quality based on chemical analysis.
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