Journal Article

Widespread Occurrence of Spliceosomal Introns in the rDNA Genes of Ascomycetes

Debashish Bhattacharya, François Lutzoni, Valérie Reeb, Dawn Simon, John Nason and Fernando Fernandez

in Molecular Biology and Evolution

Published on behalf of Society for Molecular Biology and Evolution

Volume 17, issue 12, pages 1971-1984
Published in print December 2000 | ISSN: 0737-4038
Published online December 2000 | e-ISSN: 1537-1719 | DOI: http://dx.doi.org/10.1093/oxfordjournals.molbev.a026298
Widespread Occurrence of Spliceosomal Introns in the rDNA Genes of Ascomycetes

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Spliceosomal (pre-mRNA) introns have previously been found in eukaryotic protein-coding genes, in the small nuclear RNAs of some fungi, and in the small- and large-subunit ribosomal DNA genes of a limited number of ascomycetes. How the majority of these introns originate remains an open question because few proven cases of recent and pervasive intron origin have been documented. We report here the widespread occurrence of spliceosomal introns (69 introns at 27 different sites) in the small- and large-subunit nuclear-encoded rDNA of lichen-forming and free-living members of the Ascomycota. Our analyses suggest that these spliceosomal introns are of relatively recent origin, i.e., within the Euascomycetes, and have arisen through aberrant reverse-splicing (in trans) of free pre-mRNA introns into rRNAs. The spliceosome itself, and not an external agent (e.g., transposable elements, group II introns), may have given rise to these introns. A nonrandom sequence pattern was found at sites flanking the rRNA spliceosomal introns. This pattern (AG-intron-G) closely resembles the proto-splice site (MAG-intron-R) postulated for intron insertions in pre-mRNA genes. The clustered positions of spliceosomal introns on secondary structures suggest that particular rRNA regions are preferred sites for insertion through reverse-splicing.

Journal Article.  8858 words.  Illustrated.

Subjects: Evolutionary Biology ; Molecular and Cell Biology

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