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ABCMdb reloaded: updates on mutations in ATP binding cassette proteins

Hedvig Tordai, Kristóf Jakab, Gergely Gyimesi, Kinga András, Anna Brózik, Balázs Sarkadi and Tamás Hegedűs.

in Database

P ublished online March 2017 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 6560 words.

Abstract

ABC (ATP-Binding Cassette) proteins with altered function are responsible for numerous human diseases. To aid the selection of positions and amino...

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

Chih-Hsuan Wei, Bethany R. Harris, Donghui Li, Tanya Z. Berardini, Eva Huala, Hung-Yu Kao and Zhiyong Lu.

in Database

P ublished online November 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 2642 words.

Today’s biomedical research has become heavily dependent on access to the biological knowledge encoded in expert curated biological databases. As the volume of biological literature grows...

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Actionable, long-term stable and semantic web compatible identifiers for access to biological collection objects

Anton Güntsch, Roger Hyam, Gregor Hagedorn, Simon Chagnoux, Dominik Röpert, Ana Casino, Gabi Droege, Falko Glöckler, Karsten Gödderz, Quentin Groom, Jana Hoffmann, Ayco Holleman, Matúš Kempa, Hanna Koivula, Karol Marhold, Nicky Nicolson, Vincent S. Smith and Dagmar Triebel.

in Database

P ublished online February 2017 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 3508 words.

Abstract

With biodiversity research activities being increasingly shifted to the web, the need for a system of persistent and stable identifiers for physical...

An advanced web query interface for biological databases

Mario Latendresse and Peter D. Karp.

in Database

P ublished online March 2010 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 8457 words.

Although most web-based biological databases (DBs) offer some type of web-based form to allow users to author DB queries, these query forms are quite restricted in the complexity of DB...

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aglgenes, a curated and searchable database of archaeal N-glycosylation pathway components

Noa Godin and Jerry Eichler.

in Database

P ublished online May 2014 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 1404 words.

Whereas N-glycosylation is a posttranslational modification performed across evolution, the archaeal version of this protein-processing event presents a degree of diversity not seen in...

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AIM: a comprehensive Arabidopsis interactome module database and related interologs in plants

Yi Wang, Roger Thilmony, Yunjun Zhao, Guoping Chen and Yong Q. Gu.

in Database

P ublished online December 2014 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 3302 words.

Systems biology analysis of protein modules is important for understanding the functional relationships between proteins in the interactome. Here, we present a comprehensive database named...

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Allie: a database and a search service of abbreviations and long forms

Yasunori Yamamoto, Atsuko Yamaguchi, Hidemasa Bono and Toshihisa Takagi.

in Database

P ublished online April 2011 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 3992 words.

Many abbreviations are used in the literature especially in the life sciences, and polysemous abbreviations appear frequently, making it difficult to read and understand scientific papers...

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Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies

Yu S. Huang, Matthew Horton, Bjarni J. Vilhjálmsson, Ümit Seren, Dazhe Meng, Christopher Meyer, Muhammad Ali Amer, Justin O. Borevitz, Joy Bergelson and Magnus Nordborg.

in Database

P ublished online May 2011 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 4155 words.

With large-scale genomic data becoming the norm in biological studies, the storing, integrating, viewing and searching of such data have become a major challenge. In this article, we...

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Analysis of CASP8 targets, predictions and assessment methods

ShuoYong Shi, Jimin Pei, Ruslan I. Sadreyev, Lisa N. Kinch, Indraneel Majumdar, Jing Tong, Hua Cheng, Bong-Hyun Kim and Nick V. Grishin.

in Database

January 2009; p ublished online April 2009 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 9914 words.

Results of the recent Critical Assessment of Techniques for Protein Structure Prediction, CASP8, present several valuable sources of information. First, CASP targets comprise a realistic...

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Analysis of disease-associated objects at the Rat Genome Database

Shur-Jen Wang, Stanley J. F. Laulederkind, G. T. Hayman, Jennifer R. Smith, Victoria Petri, Timothy F. Lowry, Rajni Nigam, Melinda R. Dwinell, Elizabeth A. Worthey, Diane H. Munzenmaier, Mary Shimoyama and Howard J. Jacob.

in Database

P ublished online June 2013 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 6814 words.

The Rat Genome Database (RGD) is the premier resource for genetic, genomic and phenotype data for the laboratory rat, Rattus norvegicus. In addition to organizing biological data from rats,...

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