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A “Developmental Hourglass” in Fungi

Xuanjin Cheng, Jerome Ho Lam Hui, Yung Yung Lee, Patrick Tik Wan Law and Hoi Shan Kwan.

in Molecular Biology and Evolution

June 2015; p ublished online March 2015 .

Journal Article. Subjects: Evolutionary Biology; Molecular and Cell Biology. 6303 words.

The “developmental hourglass” concept suggests that intermediate developmental stages are most resistant to evolutionary changes and that differences between species arise through...

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A “Long Indel” Model For Evolutionary Sequence Alignment

I. Miklós, G. A. Lunter and I. Holmes.

in Molecular Biology and Evolution

March 2004; p ublished online March 2004 .

Journal Article. Subjects: Evolutionary Biology; Molecular and Cell Biology. 8035 words.

We present a new probabilistic model of sequence evolution, allowing indels of arbitrary length, and give sequence alignment algorithms for our model. Previously implemented evolutionary...

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A 15-Myr-Old Genetic Bottleneck

Timothy Paape, Boris Igic, Stacey D. Smith, Richard Olmstead, Lynn Bohs and Joshua R. Kohn.

in Molecular Biology and Evolution

April 2008; p ublished online January 2008 .

Journal Article. Subjects: Evolutionary Biology; Molecular and Cell Biology. 6276 words.

Balancing selection preserves variation at the self-incompatibility locus (S-locus) of flowering plants for tens of millions of years, making it possible to detect demographic events that...

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A 39-kb Sequence Around a Blackbird Mhc Class II Gene: Ghost of Selection Past and Songbird Genome Architecture

Scott V. Edwards, Joe Gasper, Daniel Garrigan, Duane Martindale and Ben F. Koop.

in Molecular Biology and Evolution

September 2000; p ublished online September 2000 .

Journal Article. Subjects: Evolutionary Biology; Molecular and Cell Biology. 9014 words.

To gain an understanding of the evolution and genomic context of avian major histocompatibility complex (Mhc) genes, we sequenced a 38.8-kb Mhc-bearing cosmid insert from a red-winged...

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A 3D Architectural and Process-based Model of Maize Development

C. FOURNIER and B. ANDRIEU.

in Annals of Botany

February 1998; p ublished online February 1998 .

Journal Article. Subjects: Ecology and Conservation; Evolutionary Biology; Plant Sciences and Forestry. 0 words.

A 3D architectural and process-based model of maize development was implemented on the basis of the L-system software Graphtal, interfaced with physical models computing microclimate...

A 3-D functional–structural grapevine model that couples the dynamics of water transport with leaf gas exchange

Junqi Zhu, Zhanwu Dai, Philippe Vivin, Gregory A Gambetta, Michael Henke, Anthony Peccoux, Nathalie Ollat and Serge Delrot.

in Annals of Botany

April 2018; p ublished online December 2017 .

Journal Article. Subjects: Ecology and Conservation; Evolutionary Biology; Plant Sciences and Forestry. 11346 words.

Abstract

Background and Aims

Predicting both plant water status and leaf gas exchange under various environmental...

: A Practical Approach to the Study of Bonebeds

David A. Eberth, Raymond R. Rogers and Anthony R. Fiorillo.

in Bonebeds

January 2008; p ublished online February 2013 .

Chapter. Subjects: Evolutionary Biology. 23641 words.

Every bonebed preserved in the stratigraphic record reflects the interplay of complex physical, chemical, and biological phenomena. Rocks provide the overall context for bonebeds preserved...

Go to University of Chicago Press »  abstract

: A Summary of Fossilized Species in Porcupine Cave

Anthony D. Barnosky.

in Biodiversity Response to Climate Change in the Middle Pleistocene

February 2004; p ublished online March 2012 .

Chapter. Subjects: Evolutionary Biology. 6403 words.

This chapter presents a summary of fossilized species lists for each locality in Porcupine Cave, and provides estimates of number of identifiable specimens (NISP) and minimum numbers of...

Go to University of California Press »  abstract

A1 Pairwise diversity and tMRCA as potential markers of HIV infection recency

Sikhulile Moyo, Eduan Wilkinson, Alain Vandormael, Rui Wang, Jia Weng, Kenanao P Kotokwe, Simani Gaseitsiwe, Rosemary Musonda, Joseph Makhema, Max Essex, Susan Engelbrecht, Tulio de Oliveira and Vladimir Novitsky.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 173 words.

A10 Using the molecular epidemiology of HIV transmission in New South Wales to inform public health response: Assessing the representativeness of linked phylogenetic data

Angie Pinto, Francesca Di Giallonardo, Phillip Keen, Craig Cooper, Barbara Telfer, David Cooper, Andrew Grulich and Anthony Kelleher.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 330 words.

A11 The 1988 Elista outbreak and the epidemiology of HIV subtype G in Russia

Ekaterina Serova, Anastasia Murzakova, Marina Nossik, Andrey Shemshura, Georgii Bazykin and Dmitry Kireev.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 361 words.

A12 Transmitted HLA pre-adapted polymorphisms in the GAG protein influences viral evolution in the new host

D Mónaco, D Dilernia, A Gartland, K Qin, K Dennis, J Tang, J Gilmour, A Bansal, S Allen, P Goepfert and E Hunter.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 354 words.

A13 Social affects phylogeny: Exploration of ongoing and active transmission chains

M Siljic, V Cirkovic, S Lukovic, D Salemovic, I Pesic-Pavlovic, D J Jevtivic and M Stanojevic.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 369 words.

A14 Ultra-wide and ultra-deep sequencing increases the detection rate of dual HIV-1 infections and recombinants

K Van Laethem, A Thielen, Y Schrooten, F Ferreira, L Vinken and M Daümer.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 359 words.

A15 HIV-1 whole-genome NGS analysis to characterize virus evolution following dendritic cell immunotherapy and analytical treatment interruption

C Lungu, P H M Boers, C M E Schapendonk, S L Smits, D A M C van de Vijver and R A Gruters.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 297 words.

A16 Primary drug resistance among children infected with HIV-1 in Mozambique: Impact of maternal and neonatal prophylaxis

Nália Ismael, Dulce Bila, Nedio Mabunda, Martina Penazzato and Adolfo Vubil.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 419 words.

A17 Transmitted drug-resistant mutations among recently infected HIV-1 patients in Israel, 2000–2014

Roy Moscona, Daniela Ram, Marina Wax, Efrat Bucris, Itzchak Levy, Ella Mendelson and Orna Mor.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 310 words.

A18 HIV-1 genetic diversity and drug resistance in Haiti

G Delva, M Charles and C Yang.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 179 words.

A19 The impact of HIV-1 on the evolution of Mycobacterium tuberculosis

Anastasia Koch, Daniela Brites, David Stucki, Joanna C Evans, Ronnett Seldon, Alexa Heekes, Nicola Mulder, Mark Nicol, Tolu Oni, Digby F Warner, Valerie Mizrahi, Julian Parkhill, Sebastien Gagneux, Darren P Martin and Robert J Wilkinson.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 232 words.

A2 Optimization of the results generated by large-scale sequencing for the study of drug resistance in HIV infection: A systematic review

J A Fernández-Caballero, N Chueca, E Poveda and F García.

in Virus Evolution

P ublished online April 2018 .

Journal Article. Subjects: Public Health and Epidemiology; Epidemiology; Evolutionary Biology; Genetics and Genomics; Microbiology. 316 words.