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Linking fungal communities to wood density loss after 12 years of log decay

Ariana Kubartová, Elisabet Ottosson and Jan Stenlid.

Edited by Ian C Anderson.

in FEMS Microbiology Ecology

May 2015; p ublished online March 2015 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 7242 words.

Graphical Abstract Figure.

The manuscript documents importance of fungal communities, as the major wood decomposers, in dead-wood decay, which should be taken into account when modeling...

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Functional responses and adaptation of mesophilic microbial communities to psychrophilic anaerobic digestion

Eoin Gunnigle, Jeppe L. Nielsen, Matthew Fuszard, Catherine H. Botting, Jerome Sheahan, Vincent O'Flaherty and Florence Abram.

Edited by Alfons Stams.

in FEMS Microbiology Ecology

December 2015; p ublished online October 2015 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 8837 words.

Graphical Abstract Figure.

This study investigated microbial consortia driving the anaerobic digestion of wastewater and highlighted community dynamics associated with functional shifts as...

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Response of the protistan community of a rice field soil to different oxygen tensions

Yuriko Takenouchi, Kazufumi Iwasaki and Jun Murase.

Edited by Tillmann Lueders.

in FEMS Microbiology Ecology

July 2016; p ublished online May 2016 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 5399 words.

Graphical Abstract Figure.

Amoeba and flagellates in a rice field soil adapt to a wide range of oxygen tensions down to below the Pasteur point with a shift in community structure.

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Strong linkage between plant and soil fungal communities along a successional coastal dune system

Alice Roy-Bolduc, Etienne Laliberté, Stéphane Boudreau and Mohamed Hijri.

Edited by Ian Anderson.

in FEMS Microbiology Ecology

October 2016; p ublished online July 2016 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 6802 words.

Graphical Abstract Figure.

Strong correlation between vegetation and soil fungal communities, similar responses to soil properties, and increasing diversity of plant nutrient-acquisition...

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Effect of spatial origin and hydrocarbon composition on bacterial consortia community structure and hydrocarbon biodegradation rates

Lloyd D Potts, Luis J Perez Calderon, Evangelia Gontikaki, Lehanne Keith, Cécile Gubry-Rangin, James A Anderson and Ursula Witte.

in FEMS Microbiology Ecology

P ublished online June 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 8465 words.

Abstract

Oil reserves in deep-sea sediments are currently subject to intense exploration, with associated risks of oil spills. Previous research suggests that...

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Prolonged exposure does not increase soil microbial community compositional response to warming along geothermal gradients

Dajana Radujković, Erik Verbruggen, Bjarni D Sigurdsson, Niki I W Leblans, Ivan A Janssens, Sara Vicca and James T Weedon.

in FEMS Microbiology Ecology

P ublished online December 2017 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 7873 words.

Abstract

Global change is expected to affect soil microbial communities through their responsiveness to temperature. It has been proposed that prolonged...

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Bacterial and fungal communities in boreal forest soil are insensitive to changes in snow cover conditions

Minna Männistö, Jaana Vuosku, Sari Stark, Karita Saravesi, Marko Suokas, Annamari Markkola, Françoise Martz and Pasi Rautio.

in FEMS Microbiology Ecology

P ublished online June 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 9688 words.

ABSTRACT

The northern regions are experiencing considerable changes in winter climate leading to more frequent warm periods, rain-on-snow events and reduced...

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Identifying the key taxonomic categories that characterize microbial community diversity using full-scale classification: a case study of microbial communities in the sediments of Hangzhou Bay

Tianjiao Dai, Yan Zhang, Yushi Tang, Yaohui Bai, Yile Tao, Bei Huang and Donghui Wen.

Edited by Gary King.

in FEMS Microbiology Ecology

October 2016; p ublished online July 2016 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 5957 words.

Graphical Abstract Figure.

Based on a full-scale microbial taxa classification, the roles and contributions of key taxonomic categories in maintaining and altering microbial community...

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Enteropathogens associated with acute diarrhea in community and hospital patients in Jakarta, Indonesia

Buhari A. Oyofo, Decy Subekti, Periska Tjaniadi, Nunung Machpud, S. Komalarini, B. Setiawan, C. Simanjuntak, Narain Punjabi, Andrew L. Corwin, Momtaz Wasfy, James R. Campbell and Murad Lesmana.

in FEMS Immunology & Medical Microbiology

October 2002; p ublished online January 2006 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 5196 words.

Abstract

The prevalence of bacteria, parasite and viral pathogens in 3875 patients with diarrhea in community and hospital settings from March 1997 through...

Differences in planktonic microbial communities associated with three types of macrophyte stands in a shallow lake

Anikó Mentes, Attila Szabó, Boglárka Somogyi, Balázs Vajna, Nóra Tugyi, Bianka Csitári, Lajos Vörös and Tamás Felföldi.

in FEMS Microbiology Ecology

P ublished online November 2017 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 7275 words.

Abstract

Little is known about how various substances from living and decomposing aquatic macrophytes affect the horizontal patterns of planktonic bacterial...

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Stable microbial communities in the sponge Crambe crambe from inside and outside a polluted Mediterranean harbor

Shelby E. Gantt, Susanna López-Legentil and Patrick M. Erwin.

in FEMS Microbiology Letters

P ublished online May 2017 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 4177 words.

Abstract

Marine sponges have been shown to harbor diverse microbial symbiont communities that play key roles in host functioning, yet little is known about how...

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Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

Miklós Bálint, Mohammad Bahram, A. Murat Eren, Karoline Faust, Jed A. Fuhrman, Björn Lindahl, Robert B. O'Hara, Maarja Öpik, Mitchell L. Sogin, Martin Unterseher and Leho Tedersoo.

Edited by Jan Roelof van der Meer.

in FEMS Microbiology Reviews

September 2016; p ublished online June 2016 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 11685 words.

Graphical Abstract Figure.

This is an overview of the more widely adopted and emerging techniques for analysis of diversity and community composition, and the inference of species...

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Determination of fungal community diversity in fresh and traditional Chinese fermented pepper by pyrosequencing

Lingyan Zhao, Yong Li, Liwen Jiang and Fangming Deng.

Edited by Wolfgang Kneifel.

in Microbiology Letters

P ublished online December 2016 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 3856 words.

Abstract

Fermented pepper is one of the traditional Chinese fermented vegetables. The production mainly relies on the fermentation by natural microorganisms....

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High wind speeds prevent formation of a distinct bacterioneuston community in the sea-surface microlayer

Janina Rahlff, Christian Stolle, Helge-Ansgar Giebel, Thorsten Brinkhoff, Mariana Ribas-Ribas, Dorothee Hodapp and Oliver Wurl.

in FEMS Microbiology Ecology

P ublished online March 2017 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 9310 words.

Abstract

The sea-surface microlayer (SML) at the boundary between atmosphere and hydrosphere represents a demanding habitat for bacteria. Wind speed is a...

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Community structure and distribution of benthic cyanobacteria in Antarctic lacustrine microbial mats

Igor S Pessi, Yannick Lara, Benoit Durieu, Pedro de C Maalouf, Elie Verleyen and Annick Wilmotte.

in FEMS Microbiology Ecology

P ublished online March 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 8142 words.

Abstract

The terrestrial Antarctic Realm has recently been divided into 16 Antarctic Conservation Biogeographic Regions (ACBRs) based on environmental...

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Spatial structuring of bacterial communities in epilithic biofilms in the Acquarossa river (Italy)

Carolina Chiellini, Elisangela Miceli, Giovanni Bacci, Camilla Fagorzi, Ester Coppini, Donatella Fibbi, Giovanna Bianconi, Alessio Mengoni, Francesco Canganella and Renato Fani.

in FEMS Microbiology Ecology

P ublished online September 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 7891 words.

ABSTRACT

Epilithic river biofilms characterize the rock surfaces along the Acquarossa river (Viterbo, Italy); they are in part red and in part black colored,...

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A large-scale field study of bacterial communities in cereal aphid populations across Morocco

Samir Fakhour, Jérôme Ambroise, François Renoz, Vincent Foray, Jean-Luc Gala and Thierry Hance.

in FEMS Microbiology Ecology

P ublished online January 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 8107 words.

Abstract

Insects are frequently associated with bacteria that can have significant ecological and evolutionary impacts on their hosts. To date, few studies...

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Community structure explains antibiotic resistance gene dynamics over a temperature gradient in soil

T K Dunivin and A Shade.

in FEMS Microbiology Ecology

P ublished online February 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 5818 words.

Abstract

Soils are reservoirs of antibiotic resistance genes (ARGs), but environmental dynamics of ARGs are largely unknown. Long-term disturbances offer...

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eDNA from roots: a robust tool for determining Phytophthora communities in natural ecosystems

Ihsanul Khaliq, Giles E St J Hardy, Diane White and Treena I Burgess.

in FEMS Microbiology Ecology

P ublished online March 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 8831 words.

Abstract

Proper isolation and identification of Phytophthora species is critical due to their broad distribution and huge impact on natural ecosystems...

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Molecular characteristics of community-acquired, methicillinresistant Staphylococcus aureus isolated from Chinese children

Wenjing Geng, Yonghong Yang, Dejing Wu, Guoying Huang, Chuanqing Wang, Li Deng, Yuejie Zheng, Zhou Fu, Changcong Li, Yunxiao Shang, Changan Zhao, Sangjie Yu and Xuzhuang Shen.

in FEMS Immunology & Medical Microbiology

April 2010; p ublished online March 2010 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 3952 words.

Abstract

The aim of this study was to investigate the molecular characteristics of community-acquired, methicillin-resistant Staphylococcus aureus (CA-MRSA)...