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DNA fingerprint x Biochemistry x clear all

DNA fingerprint

Overview page. Subjects: Ecology and Conservation.

A set of DNA-based characters which are in a combination unique, or nearly so, to an individual organism. See also satellite DNA.

See overview in Oxford Index

TE-AFLP: combining rapidity and robustness in DNA fingerprinting

A. W. G. van der Wurff, Y. L. Chan, N. M. van Straalen and J. Schouten.

in Nucleic Acids Research

December 2000; p ublished online December 2000 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2988 words.

A new type of fingerprinting technique is presented, based on amplified fragment length polymorphism (AFLP). Rather than two endonucleases as in AFLP, we propose the use of three enzymes,...

A PCR-Based DNA Fingerprinting Technique: AFLP for Molecular Typing of Bacteria

Jhy-Jhu Lin, Jonathan Kuo and Jin Ma.

in Nucleic Acids Research

September 1996; p ublished online September 1996 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 860 words.

Amplified restriction fragment polymorphism (AFLP) is a PCR-based DNA fingerprinting technique. In AFLP analysis, bacterial genomic DNA is digested with restriction enzymes, ligated to...

cDNA fingerprinting of osteoprogenitor cells to isolate differentiation stage-specific genes

G. A. Candeliere, Y. Rao, A. Floh, S. D. Sandler and J. E. Aubin.

in Nucleic Acids Research

February 1999; p ublished online February 1999 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3079 words.

A cDNA fingerprinting strategy was developed to identify genes based on their differential expression pattern during osteoblast development. Preliminary biological and molecular staging of...

Quantitative target display: a method to screen yeast mutants conferring quantitative phenotypes by ‘mutant DNA fingerprints’

Vishva Mitra Sharma, Rohini Chopra, Indrani Ghosh and K. Ganesan.

in Nucleic Acids Research

September 2001; p ublished online September 2001 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3719 words.

Whole genome sequencing of several microbes has revealed thousands of genes of unknown function. A large proportion of these genes seem to confer subtle quantitative phenotypes or phenotypes...

Screening of Differentially Amplified cDNA Products from RNA Arbitrarily Primed PCR Fingerprints Using Single Strand Conformation Polymorphism (SSCP) Gels

Françoise Mathieu-Daudé, Rita Cheng, John Welsh and Michael McClelland.

in Nucleic Acids Research

April 1996; p ublished online April 1996 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3184 words.

Arbitrarily primed PCR fingerprinting of RNA and differential display resolved on an acrylamide gel has been extensively used to detect differentially expressed RNAs. However, after a...

In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes

Jean-François Brugère, Emmanuel Cornillot, Guy Méténier and Christian P. Vivarès.

in Nucleic Acids Research

May 2000; p ublished online May 2000 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2811 words.

A simple method for complete genome radiolabelling is described, involving long-wave UV exposure of agarose-embedded chromosomal DNA and [α-32P]dCTP incorporation mediated by the Klenow...

Peptide mass-assisted antibody cloning strategy for accurate characterization of potential therapeutic monoclonal antibodies against neurodegenerative diseases

Sosthene Essono, Gilles Clément, Severine Padiolleau-Lefevre, Christophe Créminon, Jacques Grassi and Didier Boquet.

in Protein Engineering, Design and Selection

April 2010; p ublished online December 2009 .

Journal Article. Subjects: Proteins. 5293 words.

The development of therapeutic recombinant antibodies involves accurate characterization of immunoglobulin variable light (VL) and heavy (VH) chains. However, it has been reported that the...

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A Web-based classification system of DNA-binding protein families

M. Karmirantzou and S.J. Hamodrakas.

in Protein Engineering, Design and Selection

July 2001; p ublished online July 2001 .

Journal Article. Subjects: Proteins. 4881 words.

Rational classification of proteins encoded in sequenced genomes is critical for making the genome sequences maximally useful for functional and evolutionary studies. The family of...

Go to »  abstract

Rapid determination of the complexity of cDNA bands extracted from DDRT—PCR polyacrylamide gels

Neil R. Smith, Alan Li, Mark Aldersley, Alec S. High, Alexander F. Markham and Philip A. Robinson.

in Nucleic Acids Research

September 1997; p ublished online September 1997 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 1993 words.

A band extracted from a differential display polyacrylamide gel often represents a composite of heterogeneous products. We have developed a non-radioactive method to simply and rapidly...

The Constitutive Active/Androstane Receptor Facilitates Unique Phenobarbital-Induced Expression Changes of Genes Involved in Key Pathways in Precancerous Liver and Liver Tumors

Jennifer M. Phillips, Lyle D. Burgoon and Jay I. Goodman.

in Toxicological Sciences

August 2009; p ublished online May 2009 .

Journal Article. Subjects: Medical Toxicology; Toxicology (Non-medical). 11313 words.

Our overall goal is to elucidate progressive changes, in expression and methylation status, of genes which play key roles in phenobarbital (PB)–induced liver tumorigenesis, with an emphasis...

Toxicogenomics-Based Discrimination of Toxic Mechanism in HepG2 Human Hepatoma Cells

Michael E. Burczynski, Michael McMillian, Joe Ciervo, Li Li, James B. Parker, Robert T. Dunn, Sam Hicken, Spencer Farr and Mark D. Johnson.

in Toxicological Sciences

December 2000; p ublished online December 2000 .

Journal Article. Subjects: Medical Toxicology; Toxicology (Non-medical). 8259 words.

The rapid discovery of sequence information from the Human Genome Project has exponentially increased the amount of data that can be retrieved from biomedical experiments. Gene expression...

Identification of a Transcriptional Fingerprint of Estrogen Exposure in Rainbow Trout Liver

Abby D. Benninghoff and David E. Williams.

in Toxicological Sciences

January 2008; p ublished online September 2007 .

Journal Article. Subjects: Medical Toxicology; Toxicology (Non-medical). 8826 words.

The goal of this study was to identify a set of hepatic genes regulated by ligand-dependent activation of the estrogen receptor in juvenile rainbow trout (Oncorhynchus mykiss). A custom...

Multiple Genes Exhibit Phenobarbital-Induced Constitutive Active/Androstane Receptor–Mediated DNA Methylation Changes during Liver Tumorigenesis and in Liver Tumors

Jennifer M. Phillips and Jay I. Goodman.

in Toxicological Sciences

April 2009; p ublished online February 2009 .

Journal Article. Subjects: Medical Toxicology; Toxicology (Non-medical). 10588 words.

The constitutive active/androstane receptor (CAR) mediates responses to the nongenotoxic rodent liver tumor promoter phenobarbital (PB), including certain gene expression changes,...

Phenobarbital Elicits Unique, Early Changes in the Expression of Hepatic Genes that Affect Critical Pathways in Tumor-Prone B6C3F1 Mice

Jennifer M. Phillips, Lyle D. Burgoon and Jay I. Goodman.

in Toxicological Sciences

June 2009; p ublished online March 2009 .

Journal Article. Subjects: Medical Toxicology; Toxicology (Non-medical). 9490 words.

At 2 and 4 weeks following treatment with phenobarbital (PB), the classical nongenotoxic rodent liver carcinogen, we elucidated unique gene expression changes (both induction and...

A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens

Ahmad Besaratinia, Haiqing Li, Jae-In Yoon, Albert Zheng, Hanlin Gao and Stella Tommasi.

in Nucleic Acids Research

August 2012; p ublished online June 2012 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 7271 words.

Many carcinogens leave a unique mutational fingerprint in the human genome. These mutational fingerprints manifest as specific types of mutations often clustering at certain genomic loci in...

Go to »  full text: open access

RiceFOX: A Database of Arabidopsis Mutant Lines Overexpressing Rice Full-Length cDNA that Contains a Wide Range of Trait Information to Facilitate Analysis of Gene Function

Tetsuya Sakurai, Youichi Kondou, Kenji Akiyama, Atsushi Kurotani, Mieko Higuchi, Takanari Ichikawa, Hirofumi Kuroda, Miyako Kusano, Masaki Mori, Tsutomu Saitou, Hitoshi Sakakibara, Shoji Sugano, Makoto Suzuki, Hideki Takahashi, Shinya Takahashi, Hiroshi Takatsuji, Naoki Yokotani, Takeshi Yoshizumi, Kazuki Saito, Kazuo Shinozaki, Kenji Oda, Hirohiko Hirochika and Minami Matsui.

in Plant and Cell Physiology

February 2011; p ublished online December 2010 .

Journal Article. Subjects: Biochemistry; Molecular and Cell Biology; Plant Sciences and Forestry. 4325 words.

Identification of gene function is important not only for basic research but also for applied science, especially with regard to improvements in crop production. For rapid and efficient...

Go to »  full text: open access   » abstract

Methylome profiling of cancer cells by amplification of inter-methylated sites (AIMS)

Jordi Frigola, Maria Ribas, Rosa-Ana Risques and Miguel A. Peinado.

in Nucleic Acids Research

April 2002; p ublished online April 2002 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 4932 words.

Alterations of the DNA methylation pattern have been related to generalized chromosomal disruption and inactivation of multiple tumor suppressor genes in neoplasia. To screen for...

A new and versatile method for the successful conversion of AFLP™ markers into simple single locus markers

Bart Brugmans, Ron G. M. van der Hulst, Richard G. F. Visser, Pim Lindhout and Herman J. van Eck.

in Nucleic Acids Research

May 2003; p ublished online May 2003 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 5666 words.

Genetic markers can efficiently be obtained by using amplified fragment length polymorphism (AFLP) fingerprinting because no prior information on DNA sequence is required. However, the...

Comparative gene expression profiling by oligonucleotide fingerprinting

Sebastian Meier-Ewert, Jörg Lange, Helmut Gerst, Ralf Herwig, Armin Schmitt, Jan Freund, Thorsten Elge, Hans Lehrach, Richard Mott and Bernhard Herrmann.

in Nucleic Acids Research

May 1998; p ublished online May 1998 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3936 words.

The use of hybridisation of synthetic oligonucleotides to cDNAs under high stringency to characterise gene sequences has been demonstrated by a number of groups. We have used two cDNA...

Non-stoichiometric reduced complexity probes for cDNA arrays

Thomas Trenkle, John Welsh, Barbara Jung, Francoise Mathieu-Daude and Michael McClelland.

in Nucleic Acids Research

September 1998; p ublished online September 1998 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 6571 words.

A method is presented in which the reduced complexity and non-stoichiometric amplification intrinsic to RNA arbitrarily primed PCR fingerprinting (RAP-PCR) is used to advantage to generate...