Oxford Index Search Results

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DNA fingerprint x Bioinformatics and Computational Biology x clear all

DNA fingerprint

Overview page. Subjects: Ecology and Conservation.

A set of DNA-based characters which are in a combination unique, or nearly so, to an individual organism. See also satellite DNA.

See overview in Oxford Index

TE-AFLP: combining rapidity and robustness in DNA fingerprinting

A. W. G. van der Wurff, Y. L. Chan, N. M. van Straalen and J. Schouten.

in Nucleic Acids Research

December 2000; p ublished online December 2000 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2988 words.

A new type of fingerprinting technique is presented, based on amplified fragment length polymorphism (AFLP). Rather than two endonucleases as in AFLP, we propose the use of three enzymes,...

A PCR-Based DNA Fingerprinting Technique: AFLP for Molecular Typing of Bacteria

Jhy-Jhu Lin, Jonathan Kuo and Jin Ma.

in Nucleic Acids Research

September 1996; p ublished online September 1996 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 860 words.

Amplified restriction fragment polymorphism (AFLP) is a PCR-based DNA fingerprinting technique. In AFLP analysis, bacterial genomic DNA is digested with restriction enzymes, ligated to...

cDNA fingerprinting of osteoprogenitor cells to isolate differentiation stage-specific genes

G. A. Candeliere, Y. Rao, A. Floh, S. D. Sandler and J. E. Aubin.

in Nucleic Acids Research

February 1999; p ublished online February 1999 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3079 words.

A cDNA fingerprinting strategy was developed to identify genes based on their differential expression pattern during osteoblast development. Preliminary biological and molecular staging of...

Quantitative target display: a method to screen yeast mutants conferring quantitative phenotypes by ‘mutant DNA fingerprints’

Vishva Mitra Sharma, Rohini Chopra, Indrani Ghosh and K. Ganesan.

in Nucleic Acids Research

September 2001; p ublished online September 2001 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3719 words.

Whole genome sequencing of several microbes has revealed thousands of genes of unknown function. A large proportion of these genes seem to confer subtle quantitative phenotypes or phenotypes...

Screening of Differentially Amplified cDNA Products from RNA Arbitrarily Primed PCR Fingerprints Using Single Strand Conformation Polymorphism (SSCP) Gels

Françoise Mathieu-Daudé, Rita Cheng, John Welsh and Michael McClelland.

in Nucleic Acids Research

April 1996; p ublished online April 1996 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3184 words.

Arbitrarily primed PCR fingerprinting of RNA and differential display resolved on an acrylamide gel has been extensively used to detect differentially expressed RNAs. However, after a...

In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes

Jean-François Brugère, Emmanuel Cornillot, Guy Méténier and Christian P. Vivarès.

in Nucleic Acids Research

May 2000; p ublished online May 2000 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2811 words.

A simple method for complete genome radiolabelling is described, involving long-wave UV exposure of agarose-embedded chromosomal DNA and [α-32P]dCTP incorporation mediated by the Klenow...

Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays

Waibhav Tembe, Nela Zavaljevski, Elizabeth Bode, Catherine Chase, Jeanne Geyer, Leonard Wasieloski, Gary Benson and Jaques Reifman.

in Bioinformatics

P ublished online October 2006 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 7105 words.

Motivation: Advances in DNA microarray technology and computational methods have unlocked new opportunities to identify ‘DNA fingerprints’, i.e. oligonucleotide sequences that...

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Automated ordering of fingerprinted clones

Stephane Flibotte, Readman Chiu, Chris Fjell, Martin Krzywinski, Jacqueline E. Schein, Heesun Shin and Marco A. Marra.

in Bioinformatics

May 2004; p ublished online February 2004 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Motivation: A considerable amount of human intervention is currently required to produce high-quality fingerprint-based physical maps for genomic studies.

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A computer-driven approach to PCR-based differential screening, alternative to differential display.

G G Consalez, A Cabibbo, A Corradi, C Alli, M Sardella, R Sitia and R Fesce.

in Bioinformatics

February 1999; p ublished online February 1999 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

MOTIVATION: Polymerase chain reaction (PCR)-based RNA fingerprinting is a powerful tool for the isolation of differentially expressed genes in studies of neoplasia, differentiation or...

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BLAST PRINTS--alternative perspectives on sequence similarity.

W Wright, P Scordis and T K Attwood.

in Bioinformatics

June 1999; p ublished online June 1999 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

SUMMARY: An implementation of BLAST for searching the PRINTS database is presented. The interface allows submission of either protein or DNA queries, and returns the familiar form of...

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AFLPinSilico, simulating AFLP fingerprints

Stephane Rombauts, Yves Van de Peer and Pierre Rouzé.

in Bioinformatics

April 2003; p ublished online April 2003 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Summary: A drawback of the Amplified Fragment Length Polymorphism (AFLP) fingerprinting method is the difficulty to correlate the different fragments with their DNA sequence. The...

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Oligonucleotide microarray identification of Bacillus anthracis strains using support vector machines

M. Doran, D. S. Raicu, J. D. Furst, R. Settimi, M. Schipma and D. P. Chandler.

in Bioinformatics

February 2007; p ublished online January 2007 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 4666 words.

The capability of a custom microarray to discriminate between closely related DNA samples is demonstrated using a set of Bacillus anthracis strains. The microarray was developed as a...

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AmpliBASE MT™: a Mycobacterium tuberculosis diversity knowledgebase

Ahmed A. Majeed, Niyaz Ahmed, K. Rajender Rao, S. Ghousunnissa, Farhana Kauser, Buddhaditta Bose, H. A. Nagarajaram, V. M. Katoch, Debby V. Cousins, Leonardo A. Sechi, Robert H. Gilman and Seyed E. Hasnain.

in Bioinformatics

April 2004; p ublished online February 2004 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Summary: AmpliBASE MT™ is an online databank of high-resolution DNA fingerprints representing fluorescent amplified fragment length polymorphism (FAFLP) profiles...

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Information theoretical probe selection for hybridisation experiments

Ralf Herwig, Armin O. Schmitt, Matthias Steinfath, John O’Brien, Henrik Seidel, Sebastian Meier-Ewert, Hans Lehrach and Uwe Radelof.

in Bioinformatics

October 2000; p ublished online October 2000 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Motivation: The choice of probes is an important feature of hybridisation experiments. In this paper we present an algorithm that optimises probes with respect to a training set of...

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Computational analysis of mutation spectra

Igor B. Rogozin, Vladimir N. Babenko, Luciano Milanesi and Youri I. Pavlov.

in Briefings in Bioinformatics

September 2003; p ublished online September 2003 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Mutation frequencies vary along a nucleotide sequence, and nucleotide positions with an exceptionally high mutation frequency are called hotspots. Mutation hotspots in DNA often reflect...

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Tandem repeats over the edit distance

Dina Sokol, Gary Benson and Justin Tojeira.

in Bioinformatics

January 2007; p ublished online January 2007 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 4736 words.

Motivation: A tandem repeat in DNA is a sequence of two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats occur in the genomes of both...

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Interpreting anonymous DNA samples from mass disasters—probabilistic forensic inference using genetic markers

Tien-ho Lin, Eugene W. Myers and Eric P. Xing.

in Bioinformatics

July 2006; p ublished online July 2006 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Motivation: The problem of identifying victims in a mass disaster using DNA fingerprints involves a scale of computation that requires efficient and accurate algorithms. In a...

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Automated band mapping in electrophoretic gel images using background information

Troy Zerr and Steven Henikoff.

in Nucleic Acids Research

January 2005; p ublished online January 2005 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 4637 words.

Some popular methods for polymorphism and mutation discovery involve ascertainment of novel bands by the examination of electrophoretic gel images. Although existing strategies for mapping...

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The reduction of large molecular profiles to informative components using a Genetic Algorithm

F. M. Stefanini and A. Camussi.

in Bioinformatics

October 2000; p ublished online October 2000 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Motivation: Molecular profiles (DNA fingerprints) may be used to allocate an individual of unknown membership to one among the known groups of a reference population. Time and costs of...

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Biclustering microarray data by Gibbs sampling

Qizheng Sheng, Yves Moreau and Bart De Moor.

in Bioinformatics

September 2003; p ublished online September 2003 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Motivation: Gibbs sampling has become a method of choice for the discovery of noisy patterns, known as motifs, in DNA and protein sequences. Because handling noise in microarray data...

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