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PCB

Overview page. Subjects: Computing.

(or

Abbrev. for printed circuit board. See printed circuit.

See overview in Oxford Index

FlexServ: an integrated tool for the analysis of protein flexibility

Jordi Camps, Oliver Carrillo, Agustí Emperador, Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep Lluís Gelpí and Modesto Orozco.

in Bioinformatics

July 2009; p ublished online May 2009 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1334 words.

Summary: FlexServ is a web-based tool for the analysis of protein flexibility. The server incorporates powerful protocols for the coarse-grained determination of protein...

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PMUT: a web-based tool for the annotation of pathological mutations on proteins

Carles Ferrer-Costa, Josep Lluis Gelpí, Leire Zamakola, Ivan Parraga, Xavier de la Cruz and Modesto Orozco.

in Bioinformatics

July 2005; p ublished online May 2005 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1167 words.

Summary: PMUT allows the fast and accurate prediction (~80% success rate in humans) of the pathological character of single point amino acidic mutations based on the use of...

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DNAlive: a tool for the physical analysis of DNA at the genomic scale

J. Ramon Goñi, Carlos Fenollosa, Alberto Pérez, David Torrents and Modesto Orozco.

in Bioinformatics

August 2008; p ublished online June 2008 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1214 words.

Summary: DNAlive is a tool for the analysis and graphical display of structural and physical characteristics of genomic DNA. The web server implements a wide repertoire of...

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Ewod Droplet Microfluidic Devices Using Printed Circuit Board Fabrication

Chang‐Jin ‘CJ’ Kim and Jian Gong.

in Micro/Nano Technology Systems for Biomedical Applications

March 2010; p ublished online September 2010 .

Chapter. Subjects: Bioinformatics and Computational Biology. 11965 words.

The handling of fluids as discrete packets is a promising notion in microscale, led by droplet-based (aka digital) microfluidics operated by the electrowetting-on-dielectric (EWOD)...

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nucleR: a package for non-parametric nucleosome positioning

Oscar Flores and Modesto Orozco.

in Bioinformatics

August 2011; p ublished online June 2011 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1473 words.

Summary: nucleR is an R/Bioconductor package for a flexible and fast recognition of nucleosome positioning from next generation sequencing and tiling arrays experiments. The...

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Cell-Dock: high-performance protein–protein docking

Carles Pons, Daniel Jiménez-González, Cecilia González-Álvarez, Harald Servat, Daniel Cabrera-Benítez, Xavier Aguilar and Juan Fernández-Recio.

in Bioinformatics

September 2012; p ublished online July 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1632 words.

Summary: The application of docking to large-scale experiments or the explicit treatment of protein flexibility are part of the new challenges in structural bioinformatics that...

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MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations

Adam Hospital, Pau Andrio, Carles Fenollosa, Damjan Cicin-Sain, Modesto Orozco and Josep Lluís Gelpí.

in Bioinformatics

May 2012; p ublished online March 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1255 words.

Summary: MDWeb and MDMoby constitute a web-based platform to help access to molecular dynamics (MD) in the standard and high-throughput regime. The platform provides tools to...

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Exploration of conformational transition pathways from coarse-grained simulations

Pedro Sfriso, Adam Hospital, Agustí Emperador and Modesto Orozco.

in Bioinformatics

August 2013; p ublished online June 2013 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 4992 words.

Motivation: A new algorithm to trace conformational transitions in proteins is presented. The method uses discrete molecular dynamics as engine to sample protein conformational...

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Photocleavable Biotin Phosphoramidite for 5′-End-Labeling, Affinity Purification and Phosphorylation of Synthetic Oligonucleotides

Jerzy Olejnik, Edyta Krzymanska-Olejnik and Kenneth J. Rothschild.

in Nucleic Acids Research

January 1996; p ublished online January 1996 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3526 words.

We report the design, synthesis and evaluation of a non-nucleosidic photocleavable biotin phosphoramidite (PCB-phosphoramidite) which provides a simple method for purification and...

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Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date

Olga Zhaxybayeva, Kristen S. Swithers, Julia Foght, Anna G. Green, David Bruce, Chris Detter, Shunsheng Han, Hazuki Teshima, James Han, Tanja Woyke, Sam Pitluck, Matt Nolan, Natalia Ivanova, Amrita Pati, Miriam L. Land, Marlena Dlutek, W. Ford Doolittle, Kenneth M. Noll and Camilla L. Nesbø.

in Genome Biology and Evolution

January 2012; p ublished online July 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Evolutionary Biology; Genetics and Genomics. 4349 words.

Here we describe the genome of Mesotoga prima MesG1.Ag4.2, the first genome of a mesophilic Thermotogales bacterium. Mesotoga prima was isolated from a polychlorinated biphenyl...

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