Oxford Index Search Results

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community

Overview page. Subjects: Social Sciences — Arts and Humanities.

Many sociological and anthropological definitions exist, but most tend to privilege some combination of small-scale, relative boundedness, strong affective ties, traditionalism, and...

See overview in Oxford Index

Interactions in the microbiome: communities of organisms and communities of genes

Eva Boon, Conor J. Meehan, Chris Whidden, Dennis H.-J. Wong, Morgan G.I. Langille and Robert G. Beiko.

in FEMS Microbiology Reviews

January 2014; p ublished online January 2014 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 20180 words.

Progress in our understanding of microbial communities requires clearly articulated and applied definitions of communities and the entities that constitute them, as well as new approaches...

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Measuring Community Similarity with Phylogenetic Networks

Donovan H. Parks and Robert G. Beiko.

in Molecular Biology and Evolution

December 2012; p ublished online August 2012 .

Journal Article. Subjects: Evolutionary Biology; Molecular and Cell Biology. 7369 words.

Environmental drivers of biodiversity can be identified by relating patterns of community similarity to ecological factors. Community variation has traditionally been assessed by...

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Decoding molecular interactions in microbial communities

Nicole A. Abreu and Michiko E. Taga.

Edited by Aimee Shen.

in FEMS Microbiology Reviews

September 2016; p ublished online July 2016 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 12530 words.

Graphical Abstract Figure.

Understanding how microbes interact is key to deciphering microbial community assembly and stability; approaches that span whole communities to single isolate...

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Response of Antarctic cryoconite microbial communities to light

Elizabeth A. Bagshaw, Jemma L. Wadham, Martyn Tranter, Rupert Perkins, Alistair Morgan, Christopher J. Williamson, Andrew G. Fountain, Sean Fitzsimons and Ashley Dubnick.

Edited by Rosa Margesin.

in FEMS Microbiology Ecology

June 2016; p ublished online April 2016 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 7110 words.

Graphical Abstract Figure.

Microbial communities in cryoconite holes and cryolakes on glaciers in Antarctica are adapted to low light levels and exhibit stress when exposed to high light.

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Detecting Concerted Demographic Response across Community Assemblages Using Hierarchical Approximate Bayesian Computation

Yvonne L. Chan, David Schanzenbach and Michael J. Hickerson.

in Molecular Biology and Evolution

September 2014; p ublished online June 2014 .

Journal Article. Subjects: Evolutionary Biology; Molecular and Cell Biology. 8404 words.

Methods that integrate population-level sampling from multiple taxa into a single community-level analysis are an essential addition to the comparative phylogeographic toolkit. Detecting...

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Methanogen communities in a municipal landfill complex in China

Wei Tang, Yangqing Wang, Yu Lei and Liyan Song.

Edited by Nathan Basiliko.

in FEMS Microbiology Letters

May 2016; p ublished online March 2016 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 4265 words.

Graphical Abstract Figure.

Methanogen communities in a landfill.

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Changes of soil bacterial communities in bamboo plantations at different elevations

Yu-Te Lin, William B. Whitman, David C. Coleman, Shiang-Yun Shi, Sen-Lin Tang and Chih-Yu Chiu.

Edited by Angela Sessitsch.

in FEMS Microbiology Ecology

May 2015; p ublished online May 2015 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 4064 words.

Graphical Abstract Figure.

The diversity of soil bacterial communities in bamboo plantations along a gradient from 600 to 1800 m showed a hump-backed trend with elevation.

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Supraglacial bacterial community structures vary across the Greenland ice sheet

Karen A. Cameron, Marek Stibal, Jakub D. Zarsky, Erkin Gözdereliler, Morten Schostag and Carsten S. Jacobsen.

Edited by Rosa Margesin.

in FEMS Microbiology Ecology

February 2016; p ublished online December 2015 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 7060 words.

Graphical Abstract Figure.

Bacteria sampled from surface ice and debris across the Greenland ice sheet have noteworthy kilometer-scale variations in their community structures and...

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Environmental shaping of codon usage and functional adaptation across microbial communities

Maša Roller, Vedran Lucić, István Nagy, Tina Perica and Kristian Vlahoviček.

in Nucleic Acids Research

October 2013; p ublished online August 2013 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 6971 words.

Microbial communities represent the largest portion of the Earth’s biomass. Metagenomics projects use high-throughput sequencing to survey these communities and shed light on genetic...

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Community priming—effects of sequential stressors on microbial assemblages

Matthias C. Rillig, Jens Rolff, Britta Tietjen, Jeannine Wehner and Diana R. Andrade-Linares.

Edited by Gerard Muyzer.

in FEMS Microbiology Ecology

May 2015; p ublished online April 2015 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 4878 words.

Graphical Abstract Figure.

Priming, the improved reaction of microbes following an initial, milder stress to a severe stress, needs to be examined at the level of the microbial community...

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Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes

Daniel F. R. Cleary, Leontine E. Becking, Ana R. M. Polónia, Rossana M. Freitas and Newton C. M. Gomes.

Edited by Julie Olson.

in FEMS Microbiology Ecology

May 2016; p ublished online March 2016 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 8402 words.

Graphical Abstract Figure.

Jellyfish inhabiting marine lakes in Berau, Indonesia house distinct bacterial communities dominated by OTUs assigned to the Gammaproteobacteria (family...

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Microbial community composition along a 50 000-year lacustrine sediment sequence

Aurèle Vuillemin, Daniel Ariztegui, Fabian Horn, Jens Kallmeyer and William D Orsi.

in FEMS Microbiology Ecology

P ublished online February 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 9946 words.

Abstract

For decades, microbial community composition in subseafloor sediments has been the focus of extensive studies. In deep lacustrine sediments, however,...

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Short pyrosequencing reads suffice for accurate microbial community analysis

Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D. Bushman and Rob Knight.

in Nucleic Acids Research

September 2007; p ublished online September 2007 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 4663 words.

Pyrosequencing technology allows us to characterize microbial communities using 16S ribosomal RNA (rRNA) sequences orders of magnitude faster and more cheaply than has previously been...

Arbuscular mycorrhizal fungal and soil microbial communities in African Dark Earths

Tessa Camenzind, Edith C Hammer, Johannes Lehmann, Dawit Solomon, Sebastian Horn, Matthias C Rillig and Stefan Hempel.

in FEMS Microbiology Ecology

P ublished online February 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 7799 words.

Abstract

The socio-economic values of fertile and carbon-rich Dark Earth soils are well described from the Amazon region. Very recently, Dark Earth soils were...

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Bayesian estimation of bacterial community composition from 454 sequencing data

Lu Cheng, Alan W. Walker and Jukka Corander.

in Nucleic Acids Research

July 2012; p ublished online February 2012 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 6811 words.

Estimating bacterial community composition from a mixed sample in different applied contexts is an important task for many microbiologists. The bacterial community composition is commonly...

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Microbial community structure of sea spray aerosols at three California beaches

Katherine E Graham, Aaron J Prussin, Linsey C Marr, Lauren M Sassoubre and Alexandria B Boehm.

in FEMS Microbiology Ecology

P ublished online January 2018 .

Journal Article. Subjects: Soil Science; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 8327 words.

Abstract

We characterized the microbial communities in sea spray aerosols (SSA), water and sand of three beaches in central California (Cowell Beach, Baker...

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Individual variation of natural D.melanogaster-associated bacterial communities

Yun Wang and Fabian Staubach.

in FEMS Microbiology Letters

P ublished online January 2018 .

Journal Article. Subjects: Medical Microbiology and Virology; Biotechnology; Genetics and Genomics; Microbiology; Molecular and Cell Biology. 6049 words.

Abstract

Drosophila melanogaster has become an important model organism to study host-microbe interaction in the laboratory. However, the natural...

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ASAP, a systematic annotation package for community analysis of genomes

Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael Gilson, Bryan Biehl, Frederick R. Blattner and Nicole T. Perna.

in Nucleic Acids Research

January 2003; p ublished online January 2003 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3499 words.

ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and...

Anxiety Among Community-Dwelling U.S. Chinese Older Adults

XinQi Dong, Ruijia Chen and Melissa A. Simon.

in The Journals of Gerontology: Series A

November 2014; p ublished online November 2014 .

Journal Article. Subjects: Geriatric Medicine; Public Health; Biological Sciences; Molecular and Cell Biology; Neuroscience. 4997 words.

Background.

This study aimed to explore the prevalence and correlates of anxiety disorders and any anxiety symptoms among community-dwelling U.S. Chinese...

The Mouse Genome Database (MGD): A community resource. Status and enhancements

Judith A. Blake, Janan T. Eppig, Joel E. Richardson and Muriel T. Davisson.

in Nucleic Acids Research

January 1998; p ublished online January 1998 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2647 words.

The Mouse Genome Database (MGD) is a comprehensive community database that integrates genetic, genomic and phenotypic information about the laboratory mouse. MGD provides detailed...