November 1999; p ublished online November 1999 .
Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.
Motivation: Circular permutation of a protein is a genetic operation in which part of the C-terminal of the protein is moved to its N-terminal. Recently, it has been shown that proteins...
October 2013; p ublished online July 2013 .
Journal Article. Subjects: Bioinformatics and Computational Biology. 5102 words.
Motivation: Biological systems are understood through iterations of modeling and experimentation. Not all experiments, however, are equally valuable for predictive modeling....
A memory-efficient data structure representing exact-match overlap graphs with application for next-generation DNA assembly
July 2011; p ublished online June 2011 .
Journal Article. Subjects: Bioinformatics and Computational Biology. 6509 words.
Motivation: Exact-match overlap graphs have been broadly used in the context of DNA assembly and the shortest super string problem where the number of strings n ranges from...
in Journal of the American Medical Informatics Association
May 2014; p ublished online September 2013 .
Journal Article. Subjects: Medical Statistics and Methodology; Bioinformatics and Computational Biology; Biomathematics and Statistics. 6431 words.
Background and objective Annotations to physical workspaces such as signs and notes are ubiquitous. When densely annotated, work areas...