Oxford Index Search Results

You are looking at 1-20 of 6,805 items for:

online x Bioinformatics and Computational Biology x clear all

online

Overview page. Subjects: Computing.

When a computer or a user is directly connected into a network and is capable of interacting with it, for example by querying the contents of a database.

See overview in Oxford Index

The ESID Online Database network

D. Guzman, D. Veit, V. Knerr, G. Kindle, B. Gathmann, A. M. Eades-Perner and B. Grimbacher.

in Bioinformatics

March 2007; p ublished online January 2007 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1276 words.

Summary: Primary immunodeficiencies (PIDs) belong to the group of rare diseases. The European Society for Immunodeficiencies (ESID), is establishing an innovative European...

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OMPPM: online multiple palindrome pattern matching

Hwee Kim and Yo-Sub Han.

in Bioinformatics

April 2016; p ublished online December 2015 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 4148 words.

Motivation: A palindrome is a string that reads the same forward and backward. Finding palindromic substructures is important in DNA, RNA or protein sequence analysis. We say...

The JWS online simulation database

Martin Peters, Johann J. Eicher, David D. van Niekerk, Dagmar Waltemath and Jacky L. Snoep.

in Bioinformatics

May 2017; p ublished online January 2017 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1073 words.

Abstract

Summary: JWS Online is a web-based platform for construction, simulation and exchange of models in standard formats. We have extended the...

Online tools for understanding rat physiology

Melinda R. Dwinell.

in Briefings in Bioinformatics

July 2010; p ublished online January 2010 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 3944 words.

Rat models have been used to investigate physiological and pathophysiological mechanisms for decades. With the availability of the rat genome and other online resources, tools to identify...

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Nucleosome positioning: resources and tools online

Vladimir B. Teif.

in Briefings in Bioinformatics

September 2016; p ublished online September 2015 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 8715 words.

Nucleosome positioning is an important process required for proper genome packing and its accessibility to execute the genetic program in a cell-specific, timely manner. In the recent years...

Online Predicted Human Interaction Database

Kevin R. Brown and Igor Jurisica.

in Bioinformatics

May 2005; p ublished online January 2005 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 5602 words.

Motivation: High-throughput experiments are being performed at an ever-increasing rate to systematically elucidate protein–protein interaction (PPI) networks for model...

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OGEE: an online gene essentiality database

Wei-Hua Chen, Pablo Minguez, Martin J. Lercher and Peer Bork.

in Nucleic Acids Research

January 2012; p ublished online November 2011 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2699 words.

OGEE is an Online GEne Essentiality database. Its main purpose is to enhance our understanding of the essentiality of genes. This is achieved by collecting not only...

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OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing

Shreepriya Das and Haris Vikalo.

in Bioinformatics

July 2012; p ublished online May 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 5030 words.

Motivation: Next-generation DNA sequencing platforms are becoming increasingly cost-effective and capable of providing enormous number of reads in a relatively short time....

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An online literature mining tool for protein phosphorylation

X. Yuan, Z. Z. Hu, H. T. Wu, M. Torii, M. Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker and C. H. Wu.

in Bioinformatics

July 2006; p ublished online April 2006 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1036 words.

A web-based version of the RLIMS-P literature mining system was developed for online mining of protein phosphorylation information from MEDLINE abstracts. The online tool presents extracted...

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Web-based kinetic modelling using JWS Online

Brett G. Olivier and Jacky L. Snoep.

in Bioinformatics

September 2004; p ublished online April 2004 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Summary: JWS Online is a repository of kinetic models, describing biological systems, which can be interactively run and interrogated over the Internet. It is implemented using...

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Phenoclustering: online mining of cross-species phenotypes

Philip Groth, Ivan Kalev, Ivaylo Kirov, Borislav Traikov, Ulf Leser and Bertram Weiss.

in Bioinformatics

August 2010; p ublished online June 2010 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 1335 words.

Summary: Recently, several methods for analyzing phenotype data have been published, but only few are able to cope with data sets generated in different studies, with different...

Go to »  full text: open access   » abstract

DRAGON: Database Referencing of Array Genes Online

Christopher M.L.S. Bouton and Jonathan Pevsner.

in Bioinformatics

November 2000; p ublished online November 2000 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 0 words.

Summary: ‘Database Referencing of Array Genes ONline’ or ‘DRAGON’ is a web-accessible database that aids in the analysis of differential gene expression data as a biological annotation...

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Developing an online programme in computational biology

Heather M. Vincent and Christopher Page.

in Briefings in Bioinformatics

November 2013; p ublished online September 2012 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 4812 words.

Much has been written about the need for continuing education and training to enable life scientists and computer scientists to manage and exploit the different types of biological data now...

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EXTREME: an online EM algorithm for motif discovery

Daniel Quang and Xiaohui Xie.

in Bioinformatics

June 2014; p ublished online February 2014 .

Journal Article. Subjects: Bioinformatics and Computational Biology. 5627 words.

Motivation: Identifying regulatory elements is a fundamental problem in the field of gene transcription. Motif discovery—the task of identifying the sequence preference of...

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Seeking Health Information Online: Does Wikipedia Matter?

Michaël R. Laurent and Tim J. Vickers.

in Journal of the American Medical Informatics Association

July 2009; p ublished online July 2009 .

Journal Article. Subjects: Medical Statistics and Methodology; Bioinformatics and Computational Biology; Biomathematics and Statistics. 6742 words.

Abstract

Objective: To determine the significance of the English Wikipedia as a source of online health information.

Desig...

Tripal: a construction toolkit for online genome databases

Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Margaret E. Staton, Taein Lee, Il-Hyung Cho, Sook Jung, Kirstin E. Bett and Doreen Main.

in Database

P ublished online September 2011 .

Journal Article. Subjects: Bioinformatics and Computational Biology; Ecology and Conservation; Evolutionary Biology. 7332 words.

As the availability, affordability and magnitude of genomics and genetics research increases so does the need to provide online access to resulting data and analyses. Availability of a...

Go to »  full text: open access   » abstract

LIPID MAPS online tools for lipid research

Eoin Fahy, Manish Sud, Dawn Cotter and Shankar Subramaniam.

in Nucleic Acids Research

July 2007; p ublished online July 2007 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2517 words.

The LIPID MAPS consortium has developed a number of online tools for performing tasks such as drawing lipid structures and predicting possible structures from mass spectrometry (MS) data. A...

PPG: online generation of protein pictures and animations

Cédric Binisti, Ahmed Ali Salim and Pierre Tufféry.

in Nucleic Acids Research

July 2005; p ublished online July 2005 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 2247 words.

The protein picture generator (PPG) is an online service to generate pictures of a protein structure. Its design was conceived as an answer to the need expressed by a part of the community...

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OligoCalc: an online oligonucleotide properties calculator

Warren A. Kibbe.

in Nucleic Acids Research

July 2007; p ublished online July 2007 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 1540 words.

We developed OligoCalc as a web-accessible, client-based computational engine for reporting DNA and RNA single-stranded and double-stranded properties, including molecular weight, solution...

VIOLIN: vaccine investigation and online information network

Zuoshuang Xiang, Thomas Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian and Yongqun He.

in Nucleic Acids Research

January 2008; p ublished online November 2007 .

Journal Article. Subjects: Chemistry; Biochemistry; Bioinformatics and Computational Biology; Genetics and Genomics; Molecular and Cell Biology. 3206 words.

Vaccines are among the most efficacious and cost-effective tools for reducing morbidity and mortality caused by infectious diseases. The vaccine investigation and online information network...